Nathalie Vigneron

Abi Habib, Joanna ; Lesenfants, Julie ; Vigneron, Nathalie ; Van den Eynde, Benoit. Functional Differences between Proteasome Subtypes.. In: Cells, Vol. 11, no. 3, p. 421 [1-26] (2022). doi:10.3390/cells11030421.

http://hdl.handle.net/2078.1/258977

Lichti, Cheryl F ; Vigneron, Nathalie ; Clauser, Karl R ; Van den Eynde, Benoit ; Bassani-Sternberg, Michal. Navigating Critical Challenges Associated with Immunopeptidomics-Based Detection of Proteasomal Spliced Peptide Candidates.. In: Cancer immunology research, Vol. 10, no. 3, p. 275-284 (2022). doi:10.1158/2326-6066.CIR-21-0727.

http://hdl.handle.net/2078.1/259032

Ferrari, Violette ; Stroobant, Vincent ; Abi Habib, Joanna ; Naulaerts, Stefan ; Van den Eynde, Benoît ; Vigneron, Nathalie. New Insights into the Mechanisms of Proteasome-Mediated Peptide Splicing Learned from Comparing Splicing Efficiency by Different Proteasome Subtypes. In: The Journal of Immunology, Vol. 208, no. 12, p. 2817-2828 (2022). doi:10.4049/jimmunol.2101198.

http://hdl.handle.net/2078.1/273141

Lahman, Miranda C ; Schmitt, Thomas M ; Paulson, Kelly G ; Vigneron, Nathalie ; Buenrostro, Denise ; Wagener, Felecia D ; Voillet, Valentin ; Martin, Lauren ; Gottardo, Raphael ; Bielas, Jason ; McElrath, Julie M ; Stirewalt, Derek L ; Pogosova-Agadjanyan, Era L ; Yeung, Cecilia C ; Pierce, Robert H ; Egan, Daniel N ; Bar, Merav ; Hendrie, Paul C ; Kinsella, Sinéad ; Vakil, Aesha ; Butler, Jonah ; Chaffee, Mary ; Linton, Jonathan ; McAfee, Megan S ; Hunter, Daniel S ; Bleakley, Marie ; Rongvaux, Anthony ; Van den Eynde, Benoit ; Chapuis, Aude G ; Greenberg, Philip D. Targeting an alternate Wilms' tumor antigen 1 peptide bypasses immunoproteasome dependency.. In: Science translational medicine, Vol. 14, no. 631, p. eabg8070 [1-14] (2022). doi:10.1126/scitranslmed.abg8070.

http://hdl.handle.net/2078.1/259037

Klaessens, Simon ; Stroobant, Vincent ; Hoffmann, Delia ; Gyrd-Hansen, Mads ; Pilotte, Luc ; Vigneron, Nathalie ; De Plaen, Etienne ; Van den Eynde, Benoît. Tryptophanemia is controlled by a tryptophan-sensing mechanism ubiquitinating tryptophan 2,3-dioxygenase. In: Proceedings of the National Academy of Sciences, Vol. 118, no.23, p. e2022447118 (2021). doi:10.1073/pnas.2022447118.

http://hdl.handle.net/2078.1/248558

Abi Habib, Joanna ; De Plaen, Etienne ; Stroobant, Vincent ; Zivkovic, Dusan ; Bousquet, Marie-Pierre ; Guillaume, Benoît ; Wahni, Khadija ; Messens, Joris ; Busse, Antonia ; Vigneron, Nathalie ; Van den Eynde, Benoît. Efficiency of the four proteasome subtypes to degrade ubiquitinated or oxidized proteins.. In: Scientific reports, Vol. 10, no. 1, p. 15765 [1-17] (2020). doi:10.1038/s41598-020-71550-5.

http://hdl.handle.net/2078.1/245194

Vigneron, Nathalie ; Stroobant, Vincent ; Ma, Wenbin ; Michaux, Alexandre ; Van den Eynde, Benoît. Identifying Antigens Recognized by Cytolytic T Lymphocytes on Tumors.. In: Methods in molecular biology (Clifton, N.J.), Vol. 1988, p. 159-186 (2019). doi:10.1007/978-1-4939-9450-2_13 (Soumis).

http://hdl.handle.net/2078.1/227232

Zanker, Damien J ; Oveissi, Sara ; Tscharke, David C ; Duan, Mubing ; Wan, Siyuan ; Zhang, Xiaomu ; Xiao, Kun ; Mifsud, Nicole A ; Gibbs, James ; Izzard, Lenny ; Dlugolenski, Daniel ; Faou, Pierre ; Laurie, Karen L ; Vigneron, Nathalie ; Barr, Ian G ; Stambas, John ; Van den Eynde, Benoît ; Bennink, Jack R ; Yewdell, Jonathan W ; Chen, Weisan. Influenza A Virus Infection Induces Viral and Cellular Defective Ribosomal Products Encoded by Alternative Reading Frames.. In: Journal of immunology (Baltimore, Md. : 1950), Vol. 202, no.12, p. 3370-3380 (2019). doi:10.4049/jimmunol.1900070.

http://hdl.handle.net/2078.1/227231

Vigneron, Nathalie ; Ferrari, Violette ; Van den Eynde, Benoît ; Cresswell, Peter ; Leonhardt, Ralf M.. Cytosolic Processing Governs TAP-Independent Presentation of a Critical Melanoma Antigen. In: The Journal of Immunology, Vol. 201, no. 7, p. 1875-1888 (2018). doi:10.4049/jimmunol.1701479.

http://hdl.handle.net/2078.1/213630

Vigneron, Nathalie ; Stroobant, Vincent ; Ferrari, Violette ; Abi Habib, Joanna ; Van den Eynde, Benoît. Production of spliced peptides by the proteasome. In: Molecular Immunology, (2018). doi:10.1016/j.molimm.2018.03.030 (Accepté/Sous presse).

http://hdl.handle.net/2078.1/199808

Vigneron, Nathalie ; Abi Habib, Joanna ; Van den Eynde, Benoît. Learning from the Proteasome How To Fine-Tune Cancer Immunotherapy. In: Trends in Cancer, Vol. 3, p. 726-741 (2017). doi:10.1016/j.trecan.2017.07.007.

http://hdl.handle.net/2078.1/194329

Vigneron, Nathalie ; Ferrari, Violette ; Stroobant, Vincent ; Abi Habib, Joanna ; Van den Eynde, Benoît. Peptide splicing by the proteasome. In: Journal of Biological Chemistry, Vol. 292, no. 51, p. 21170-21179 (2017). doi:10.1074/jbc.r117.807560.

http://hdl.handle.net/2078.1/194330

Ma, Wenbin ; Zhang, Yi ; Vigneron, Nathalie ; Stroobant, Vincent ; Thielemans, Kris ; van der Bruggen, Pierre ; Van den Eynde, Benoît. Long-Peptide Cross-Presentation by Human Dendritic Cells Occurs in Vacuoles by Peptide Exchange on Nascent MHC Class I Molecules.. In: Journal of Immunology, Vol. 196, no.4, p. 1711-1720 (2016). doi:10.4049/jimmunol.1501574.

http://hdl.handle.net/2078.1/172707

Ebstein, F. ; Textoris-Taube, K. ; Keller, C. ; Golnik, R. ; Vigneron, Nathalie ; Van den Eynde, Benoît ; Schuler-Thurner, B. ; Schadendorf, D. ; Lorenz, F. K. ; Uckert, W. ; Urban, S. ; Lehmann, A. ; Albrecht-Koepke, N. ; Janek, K. ; Henklein, P. ; Niewienda, A. ; Kloetzel, P. M. ; Mishto, M.. Proteasomes generate spliced epitopes by two different mechanisms and as efficiently as non-spliced epitopes.. In: Scientific Reports, Vol. 6, no.24032, p. / (6 avril 2016). doi:10.1038/srep24032.

http://hdl.handle.net/2078.1/174936

Fabre, Bertrand ; Lambour, Thomas ; Garrigues, Luc ; Amalric, François ; Vigneron, Nathalie ; Menneteau, Thomas ; Stella, Alexandre ; Monsarrat, Bernard ; Van den Eynde, Benoît ; Burlet-Schiltz, Odile ; Bousquet-Dubouch, Marie-Pierre. Deciphering preferential interactions within supramolecular protein complexes: the proteasome case. In: Molecular Systems Biology, Vol. 11, no. 1, p. 771 [1-15] (2015). doi:10.15252/msb.20145497.

http://hdl.handle.net/2078.1/153808

Vigneron, Nathalie ; van Baren, Nicolas ; Van den Eynde, Benoît. Expression profile of the human IDO1 protein, a cancer drug target involved in tumoral immune resistance. In: OncoImmunology, Vol. 4, no. 5, p. e1003012 (2015). doi:10.1080/2162402X.2014.1003012.

http://hdl.handle.net/2078.1/153810

Vigneron, Nathalie. Human tumor antigens and cancer immunotherapy. In: BioMed Research International, Vol. 2015, p. 1-17 (2015).

http://hdl.handle.net/2078.1/157309

Vigneron, Nathalie ; Abi Habib, Joanna ; Van den Eynde, Benoît. The capture proteasome assay (CAPA) to evaluate subtype-specific proteasome inhibitors. In: Data in Brief, Vol. 4, no./, p. 146-151 (May 2015). doi:10.1016/j.dib.2015.04.019.

http://hdl.handle.net/2078.1/172708

Vigneron, Nathalie ; Abi Habib, Joanna ; Van den Eynde, Benoît. The capture proteasome assay (CAPA): a method to measure proteasome activity in vitro. In: Analytical Biochemistry, (22/04/2015). doi:10.1016/j.ab.2015.04.019 (Accepté/Sous presse).

http://hdl.handle.net/2078.1/158670

Michaux, Alexandre ; Larrieu, Pierre ; Stroobant, Vincent ; Fonteneau, Jean-François ; Jotereau, Françine ; Van den Eynde, Benoît ; Moreau-Aubry, Agnès ; Vigneron, Nathalie. A spliced antigenic peptide comprising a single spliced amino acid is produced in the proteasome by reverse splicing of a longer peptide fragment followed by trimming. In: Journal of Immunology, Vol. 192, no. 4, p. 1962-1971 (15 février 2014). doi:10.4049/jimmunol.1302032.

http://hdl.handle.net/2078.1/136492

Vigneron, Nathalie ; Van den Eynde, Benoît. Proteasome subtypes and regulators in the processing of antigenic peptides presented by class I molecules of the major histocompatibility complex. In: Biomolecules, Vol. 4, no.4, p. 994-1025 (18 Novembre 2014). doi:10.3390/biom4040994.

http://hdl.handle.net/2078.1/153809

Leonhardt, Ralf M ; Vigneron, Nathalie ; Hee, Jia Shee ; Graham, Morven ; Cresswell, Peter. Critical residues in the PMEL/Pmel17 N-terminus direct the hierarchical assembly of melanosomal fibrils.. In: Molecular Biology of the Cell, Vol. 24, no. 7, p. 964-981 (2013). doi:10.1091/mbc.E12-10-0742.

http://hdl.handle.net/2078.1/127339

Vigneron, Nathalie ; Stroobant, Vincent ; Van den Eynde, Benoît ; van der Bruggen, Pierre. Database of T cell-defined human tumor antigens: the 2013 update.. In: Cancer Immunity, Vol. 13, p. 15 (2013).

http://hdl.handle.net/2078.1/136488

van der Bruggen, Pierre ; Stroobant, Vincent ; Vigneron, Nathalie ; Van den Eynde, Benoît. Peptide database of T-cell defined tumor antigens. In: Cancer Immunity, (2013).

http://hdl.handle.net/2078/120977

Stroobant, Vincent ; Demotte, Nathalie ; Luiten, Rosalie M ; Leonhardt, Ralf M ; Cresswell, Peter ; Bonehill, Aude ; Michaux, Alexandre ; Ma, Wenbin ; Mulder, Arend ; Van den Eynde, Benoît ; van der Bruggen, Pierre ; Vigneron, Nathalie. Inefficient exogenous loading of a tapasin-dependent peptide onto HLA-B*44:02 can be improved by acid treatment or fixation of target cells. In: European Journal of Immunology, Vol. 42, no. 6, p. 1417-1428 (2012). doi:10.1002/eji.201141954.

http://hdl.handle.net/2078/121044

Vigneron, Nathalie ; Van den Eynde, Benoît. Proteasome subtypes and the processing of tumor antigens: increasing antigenic diversity. In: Current Opinion in Immunology, Vol. 24, no.1, p. 84-91 (2012). doi:10.1016/j.coi.2011.12.002.

http://hdl.handle.net/2078/121064

Ma, Wenbin ; Vigneron, Nathalie ; Chapiro, Jacques ; Stroobant, Vincent ; Germeau, Catherine ; Boon, Thierry ; Coulie, Pierre G. ; Van den Eynde, Benoît. A MAGE-C2 antigenic peptide processed by the immunoproteasome is recognized by cytolytic T cells isolated from a melanoma patient after successful immunotherapy. In: International Journal of Cancer, Vol. 129, no. 10, p. 2427-2434 (2011). doi:10.1002/ijc.25911.

http://hdl.handle.net/2078/88199

Dalet, Alexandre ; Robbins, Paul F. ; Stroobant, Vincent ; Vigneron, Nathalie ; Li, Yong F. ; El-Gamil, Mona ; Hanada, Ken-ichi ; Yang, James C. ; Rosenberg, Steven A. ; Van den Eynde, Benoît. An antigenic peptide produced by reverse splicing and double asparagine deamidation. In: Proceedings of the National academy of sciences of the United States of America, Vol. 108, no. 29, p. E323-331 (19/07/2011). doi:10.1073/pnas.1101892108.

http://hdl.handle.net/2078.1/106225

Dalet, Alexandre ; Stroobant, Vincent ; Vigneron, Nathalie ; Van den Eynde, Benoît. Differences in the production of spliced antigenic peptides by the standard proteasome and the immunoproteasome. In: European Journal of Immunology, Vol. 41, no. 1, p. 39-46 (01/01/2011). doi:10.1002/eji.201040750.

http://hdl.handle.net/2078.1/106258

Vigneron, Nathalie ; Van den Eynde, Benoît. Insights into the processing of MHC class I ligands gained from the study of human tumor epitopes. In: Cellular and Molecular Life Sciences, Vol. 68, no. 9, p. 1503-1520 (01/05/2011). doi:10.1007/s00018-011-0658-x.

http://hdl.handle.net/2078.1/106227

Leonhardt, Ralf M ; Vigneron, Nathalie ; Rahner, Christoph ; Cresswell, Peter. Proprotein convertases process Pmel17 during secretion.. In: Journal of Biological Chemistry, Vol. 286, no. 11, p. 9321-9337 (2011). doi:10.1074/jbc.M110.168088.

http://hdl.handle.net/2078/136502

Leonhardt, Ralf M. ; Vigneron, Nathalie ; Rahner, Christoph ; Van den Eynde, Benoît ; Cresswell, Peter. Endoplasmic reticulum export, subcellular distribution, and fibril formation by Pmel17 require an intact N-terminal domain junction. In: Journal of Biological Chemistry, Vol. 285, no. 21, p. 16166-16183 (2010). doi:10.1074/jbc.M109.097725.

http://hdl.handle.net/2078.1/33868

Dalet, Alexandre ; Vigneron, Nathalie ; Stroobant, Vincent ; Hanada, Ken-Ichi ; Van den Eynde, Benoît. Splicing of distant peptide fragments occurs in the proteasome by transpeptidation and produces the spliced antigenic peptide derived from fibroblast growth factor-5. In: Journal of Immunology, Vol. 184, no. 6, p. 3016-3024 (2010). doi:10.4049/jimmunol.0901277.

http://hdl.handle.net/2078.1/29685

Vigneron, Nathalie. [Antigenic peptides for peptide splicing in the proteosome].. In: Bulletin et mémoires de l'Académie royale de médecine de Belgique, Vol. 165, no. 5-6, p. 305-309 (2010).

http://hdl.handle.net/2078.1/136503

Vigneron, Nathalie ; Peaper, David R ; Leonhardt, Ralf M ; Cresswell, Peter. Functional significance of tapasin membrane association and disulfide linkage to ERp57 in MHC class I presentation.. In: European Journal of Immunology, Vol. 39, no.9, p. 2371-2376 (2009). doi:10.1002/eji.200939536.

http://hdl.handle.net/2078.1/136510

Ertz, Damien ; Miadlikowska, Jolanta ; Lutzoni, François ; Dessein, Steven ; Raspé, Olivier ; Vigneron, Nathalie ; Hofstetter, Valérie ; Diederich, Paul. Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha.. In: Mycological Research, Vol. 113, no. 1, p. 141-152 (2009). doi:10.1016/j.mycres.2008.09.002.

http://hdl.handle.net/2078/136498

Tykodi, Scott S. ; Fujii, Nobuharu ; Vigneron, Nathalie ; Lu, Sharon M. ; Mito, Jeffrey K. ; Miranda, Maureen X. ; Chou, Jeffrey ; Voong, Lilien N. ; Thompson, John A. ; Sandmaier, Brenda M. ; Cresswell, Peter ; Van den Eynde, Benoît ; Riddell, Stanely R. ; Warren, Edus H.. C19orf48 encodes a minor histocompatibility antigen recognized by CD8+ cytotoxic T cells from renal cell carcinoma patients. In: Clinical Cancer Research, Vol. 14, no. 16, p. 5260-5269 (15/08/2008). doi:10.1158/1078-0432.CCR-08-0028.

http://hdl.handle.net/2078.1/106298

Warren, Edus H. ; Vigneron, Nathalie ; Gavin, Marc A. ; Coulie, Pierre G. ; Stroobant, Vincent ; Dalet, Alexandre ; Tykodi, Scott S. ; Xuereb, Suzanne M. ; Mito, Jeffrey K. ; Riddell, Stanley R. ; Van den Eynde, Benoît. An antigen produced by splicing of noncontiguous peptides in the reverse order. In: Science, Vol. 313, no. 5792, p. 1444-1447 (2006). doi:10.1126/science.1130660.

http://hdl.handle.net/2078.1/38283

Vigneron, Nathalie ; Ooms, Annie ; Morel, Sandra ; Ma, Wenbin ; Degiovanni, Gérard ; Van den Eynde, Benoît. A peptide derived from melanocytic protein gp100 and presented by HLA-B35 is recognized by autologous cytolytic T lymphocytes on melanoma cells. In: Tissue Antigens, Vol. 65, no. 2, p. 156-162 (2005). doi:10.1111/j.1399-0039.2005.00365.x.

http://hdl.handle.net/2078.1/39536

Germeau, Catherine ; Ma, Wenbin ; Schiavetti, Francesca ; Lurquin, Christophe ; Henry, Emmanuelle ; Vigneron, Nathalie ; Brasseur, Francis ; LETHE, Bernard ; De Plaen, Etienne ; Velu, Thierry ; Boon, Thierry ; Coulie, Pierre G.. High frequency of antitumor T cells in the blood of melanoma patients before and after vaccination with tumor antigens. In: The Journal of Experimental Medicine, Vol. 201, no. 2, p. 241-248 (2005). doi:10.1084/jem.20041379.

http://hdl.handle.net/2078.1/39589

Vigneron, Jean Pol ; Colomer, Jean-François ; Vigneron, Nathalie ; Lousse, Virginie. Natural layer-by-layer photonic structure in the squamae of Hoplia coerulea (Coleoptera).. In: Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics, no. 6 Pt 1, p. 061904 (2005).

http://hdl.handle.net/2078.2/136495

Vigneron, Nathalie ; Stroobant, Vincent ; Chapiro, Jacques ; Ooms, Annie ; Degiovanni, Gérard ; Morel, Sandra ; van der Bruggen, Pierre ; Boon, Thierry ; Van den Eynde, Benoît. An antigenic peptide produced by peptide splicing in the proteasome. In: Science, Vol. 304, no. 5670, p. 587-590 (2004). doi:10.1126/science.1095522.

http://hdl.handle.net/2078.1/40260

Ma, Wenbin ; Germeau, Catherine ; Vigneron, Nathalie ; Maernoudt, Anne-Sophie ; Morel, Sandra ; Boon, Thierry ; Coulie, Pierre G. ; Van den Eynde, Benoît. Two new tumor-specific antigenic peptides encoded by gene MAGE-C2 and presented to cytolytic T lymphocytes by HLA-A2. In: International Journal of Cancer, Vol. 109, no. 5, p. 698-702 (2004). doi:10.1002/ijc.20038.

http://hdl.handle.net/2078.1/29501

Vigneron, Nathalie ; Ooms, Annie ; Morel, Sandra ; Degiovanni, Gérard ; Van den Eynde, Benoît. Identification of a new peptide recognized by autologous cytolytic T lymphocytes on a human melanoma. In: Cancer Immunity, Vol. 2, p. 9 (2002).

http://hdl.handle.net/2078.1/106315

Vigneron, Nathalie ; Ma, Wenbin ; Michaux, Alexandre ; Van den Eynde, Benoît. Identifying source proteins for MHC class I-presented peptides.. In: Peter Endert, Antigen processing : methods in molecular biology (Vol. 960), Humana Press, Inc.: (United States) Totowa, 2013, pages 187–207. 9781627032186. doi:10.1007/978-1-62703-218-6_16.

http://hdl.handle.net/2078.1/130086