Benoît Stenuit

Stenuit, B. (2023). Introduction to microbial ecosystems and microbiome engineering. Virtual conference organized by Detic Institute. Unraveling the Science: Probiotics in Cosmetics and Detergents.

Henry, G., Gerin, P., & Stenuit, B. (2023). Mixed microbial chain elongation based on organic feedstock, H2 and CO2. ELI Day 2023, Louvain-la-Neuve, Belgium.

Henry, G., Awedem Wobiwo, F., Isenborghs, A., Nicolay, T., Godin, B., Stenuit, B., & Gerin, P. (2023). A specific H2/CO2 consumption molar ratio of 3 as a signature for the chain elongation of carboxylates from brewer’s spent grain acidogenesis. Frontiers in Bioengineering and Biotechnology, 11(10.3389), 1-16. https://doi.org/10.3389/fbioe.2023.1165197 (Original work published 2023)

Keshani-Langroodi, S., Lan, Y., Stenuit, B., Rosen, G., Hughes, J. B., Alvarez-Cohen, L., & Sales, C. M. (2020). Uncovering the Structure and Function of Microbial Communities Formed During Periodic Tilling of TNT and DNT Co-Contaminated Soils. BioRxiv. Published. https://doi.org/10.1101/2020.12.12.420737 (Original work published 2020)

Augelletti, F., Tremblay, J., Agathos, S. N., Jousset, A., & Stenuit, B. (2020). Draft Whole-Genome Sequence of the Anthracene-Degrading Strain Mycolicibacterium frederiksbergense LB501T, Isolated from a Polycyclic Aromatic Hydrocarbon-Contaminated Soil. Microbiology Resource Announcements, 9(43), e00671-20. https://doi.org/10.1128/mra.00671-20 (Original work published 2020)

Agathos, S. N., & Stenuit, B. (2019). Introduction - Environmental and Related Biotechnologies. In Murray Moo-Young (ed.), Comprehensive Biotechnology (pp. 1-3). Elsevier Inc. https://doi.org/10.1016/B978-0-444-64046-8.00334-7

Stenuit, B., & Agathos, S. N. (2019). Biodegradation and Bioremediation of TNT and Other Nitro Explosives. In Murray Moo-Young (ed.) (ed.), Comprehensive biotechnology. Elsevier Inc. https://doi.org/10.1016/B978-0-444-64046-8.00348-7

Augelletti, F., Stenuit, B., Agathos, S. N., & Jousset, A. (2019). Manipulation of Biodiversity to Steer and Optimize Microbial Community Function. In Murray Moo-Young (ed.) (ed.), Comprehensive biotechnology. Elsevier Inc. https://doi.org/10.1016/B978-0-444-64046-8.00478-X

Matos, G., Oliveira, A., Coutinho, D., Oliva, T., Junior, C., Stenuit, B., Agathos, S. N., Lutterbach, M., & Sérvulo, E. (2019). Culturable Microbiome and Biodegradation Activity of Diesel B5 and Biodiesel (B100) in a Contaminated Soil Bioremediation Study. In Torben Lund Skovhus, Corinne Whitby (ed.), Oilfield Microbiology (1st ed., p. p. 175-196). CRC Press. https://doi.org/10.1201/9781315164700

Mao, X., Stenuit, B., Tremblay, J., Yu, K., Tringe, S. G., & Alvarez-Cohen, L. (2019). Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor. Water Research X, 158, 146-156. https://doi.org/10.1016/j.watres.2019.04.038 (Original work published 2019)

Vermeire, M.-L., Bonneville, S., Stenuit, B., Delvaux, B., & Cornélis, J.-T. (2019). Is microbial reduction of Fe (III) in podzolic soils influencing C release? Geoderma, 340, 1-10. https://doi.org/10.1016/j.geoderma.2018.12.045 (Original work published 2019)

Agathos, S. N., & Stenuit, B. (2019). Comprehensive Biotechnology. Vol. 6., Environmental and Related Technologies. Agathos, Spiros N. and Stenuit, Benoît.

Augelletti, F., Tremblay, J., Agathos, S. N., & Stenuit, B. (2018). Draft Whole-Genome Sequence of the Fluorene-Degrading Sphingobium sp. Strain LB126, Isolated from Polycyclic Aromatic Hydrocarbon-Contaminated Soil. Genome Announcements, 6(15), e00249-18. https://doi.org/10.1128/genomea.00249-18 (Original work published 2018)

Augelletti, F., Agathos, S. N., & Stenuit, B. (2017). Psychrophilic bacterial, synthetic consortia for biological treatment of artificial wastewater at low temperatures. Inter-University Attraction Poles programme on Microbial Resource Management in engineered and natural ecosystems, From syntheti, Ghent, Belgium.

Men, Y., Yu, K., Bælum, J., Gao, Y., Tremblay, J., Prestat, E., Stenuit, B., Tringe, S. G., Jansson, J., Zhang, T., & Alvarez-Cohen, L. (2017). Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions. Applied and Environmental Microbiology, 83(8), e03508-16 [1-14]. https://doi.org/10.1128/AEM.03508-16 (Original work published 2017)

Vermeire, M.-L., Bonneville, S., Stenuit, B., Delvaux, B., & Cornélis, J.-T. (2016). Bacterial FeIII reduction enhances the dissociation of Fe oxyhydroxides - organic matter associations in podzolic Bhs soil horizons. Goldschmidt 2016, Yokohama, Japan.

Vermeire, M.-L., Bonneville, S., Stenuit, B., Delvaux, B., & Cornélis, J.-T. (2016). Bacterial FeIII reduction enhances the dissociation of Fe oxyhydroxides - organic matter associations in podzolic Bhs soil horizons. Les 13es journées d’études des sols JES 2016, Louvain-la-Neuve, Belgium.

Berg, M., Stenuit, B., Ho, J., Wang, A., Parke, C., Knight, M., Alvarez-Cohen, L., & Department of Integrative Biology, U. o. C. B. B. C. U. (2016). Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments. The I S M E Journal : multidisciplinary journal of microbial ecology, 10(8), 1998-2009. https://doi.org/10.1038/ismej.2015.253 (Original work published 2016)

Matos, G. I., Junior, C. S., Oliva, T. C., Subtil, D. F., Matsushita, L. Y., Chaves, A. L., Lutterbach, M. T., Sérvulo, E. F., Agathos, S. N., & Stenuit, B. (2015). Bacterial community dynamics and ecotoxicological assessment during bioremediation of soils contaminated by biodiesel and diesel/biodiesel blends. Communications in Agricultural and Applied Biological Sciences, 80(1), 157-161. (Original work published 2015)

Stenuit, B., & Agathos, S. N. (2015). Deciphering microbial community robustness through synthetic ecology and molecular systems synecology. Current Opinion in Biotechnology, 33(1), 305-317. https://doi.org/10.1016/j.copbio.2015.03.012 (Original work published 2015)

Mao, X., Stenuit, B., Polasko, A., & Alvarez-Cohen, L. (2015). Efficient Metabolic Exchange and Electron Transfer within a Syntrophic Trichloroethene-Degrading Coculture of Dehalococcoides mccartyi 195 and Syntrophomonas wolfei. Applied and Environmental Microbiology, 81(6), 2015-2024. https://doi.org/10.1128/aem.03464-14 (Original work published 2015)

Berg, M., Stenuit, B., Ho, J., Parke, C., Alvarez-Cohen, L., & Shapira, M. (2015). The C. elegans gut microbiota and its significance to its host. Genetics Society of America Conferences. C. elegans 2015. 20th International Meeting, University of California, LA.

Stenuit, B., & Agathos, S. N. (2015). Construction of chemostat arrays for the study of PAHs biodegradation by bacterial consortia under disturbances. 6th European Bioremediation Conference (EBC-VI), Chania, Crete, Greece.

Lan, Y., Stenuit, B., Rosen, G. L., Hughes, J. B., Alvarez-Cohen, L., Mack, E. E., & Sales, C. M. (2014). Effects of historical TNT contamination and mechanical tillage on soil microbiome. 15th International Symposium on Microbial Ecology, ISME15, Seoul, South Korea.

Men, Y., Yu, K., Tremblay, J., Baelum, J., Prestat, E., Stenuit, B., Tringe, S. G., Jansson, J. K., Zhang, T., & Alvarez-Cohen, L. (2014). Using meta-omic tools to investigate ecological roles of supportive microorganisms in Dehalococcoides-containing microbial communities. 15th International Symposium on Microbial Ecology, ISME15, Seoul, South Korea.

Stenuit, B. (2014). Warefare ecology and environmental history of contaminated ecosystems from World War I: Case studies in Belgium one century after the outbreak of the Great War. American Society for Environmental History, ASEH Conference, San Francisco, CA.

Stenuit, B., & Agathos, S. N. (2014). Robustness and ecological resilience of microbial communities: from intrinsic natural dynamics to disturbance-driven responses. Workshop on Engineering and Control of Natural and Synthetic Microbial Communities, The Isaac Newton Institute for Mathematical, Cambridge, UK.

Grama, B. S., Chader, S., Khelifi, D., Stenuit, B., Jeffryes, C., & Agathos, S. N. (2014). Characterization of fatty acid and carotenoid production in an Acutodesmus microalga isolated from the Algerian Sahara. Biomass & Bioenergy, 69, 265-275. https://doi.org/10.1016/j.biombioe.2014.07.023 (Original work published 2014)

Stenuit, B., & Agathos, S. N. (2013). Managing Microbial Robustness Using Molecular Systems Synecology: Applications for the Biogeochemical Cycling of Anthropogenic Compounds and Biogenic Molecules of Keystone Significance. Annual Symposium, Microbial Diversity for Science and Industry (BSM), Brussel, Belgium.

Stenuit, B., & Agathos, S. N. (2013). Conceptual and methodological framework to manage microbial robustness using molecular systems synecology: Applications for the biodegradation of contaminants of emerging concern. The 2nd Thünen Symp. on Soil Metagenomics, Braunschweig, Germany.

Stenuit, B., Tremblay, J., Mao, X., Men, Y., Tringe, S. G., & Alvarez-Cohen, L. (2013). Molecular systems synecology of TCE-dechlorinating microbial communities using stable isotope probing combined with illumina sequencing techniques. Joint Genome Institute (JGI) Genomics of Energy & Environment Meeting. 8th Annual DOE JGI User Meeting., Walnut Creek, CA.

Stenuit, B., & Agathos, S. N. (2013). Targeted illumina sequencing of 16S rRNA and functional marker genes to decipher microbial communities involved in biogeochemical cycling processes. Workshop MicroB3-MetaExplore. Harvesting Environmental Genomes for the Development of Biocatalysts, Groningen, Netherlands.

Stenuit, B., & Agathos, S. N. (2013). Biodegradation and Bioremediation of TNT and Other Nitro Explosives. In Collectif (ed.), Reference Module in Earth Systems and Environmental Sciences. Elsevier. https://doi.org/10.1016/B978-0-12-409548-9.00364-X

Stenuit, B., Tremblay, J., Mao, X., Men, Y., Tringe, S. G., & Alvarez-Cohen, L. (2012). Insights into the functional organization of TCE-dechlorinating microbial communities using stable isotope probing combined with targeted Illumina sequencing of multiplex 16S rRNA amplicon libraries. The 25th Annual Meeting of the Superfund Research Program. The National Institute of Environmental Health Sciences (NIEHS), Raleigh, North Carolina.

Stenuit, B., Mao, X., Men, Y., & Alvarez-Cohen, L. (2012). Identification of active fermenters and hidden microbial partnerships in TCE-dechlorinating microbial communities using DNA-based and RNA-based stable isotope probing. 112th General Meeting American Society for Microbiology, ASM2012, San Francisco, CA.

Espino Devine, C., Buscheck, T., Gilpin, A., Lafferty, M., Stenuit, B., Alvarez-Cohen, L., Philp, P., & Kuder, T. (2012). Biodegradation of 1,4-dioxane: field and laboratory evaluation using compound-specific isotope analysis, molecular biological tools and microcosm studies. Eighth (8th) International Conference on the Remediation of Chlorinated and Recalcitrant Compound, Monterey, CA,.

Stenuit, B., Lamblin, G., Cornelis, P., & Agathos, S. N. (2012). Aerobic Denitration of 2,4,6-Trinitrotoluene in the Presence of Phenazine Compounds and Reduced Pyridine Nucleotides. Environmental Science & Technology (Washington), 46(19), 10605-10613. https://doi.org/10.1021/es302046h (Original work published 2012)

Stenuit, B., & Agathos, S. N. (2011). Biodegradation and Bioremediation of TNT and Other Nitro Explosives. In Moo-Young, Murray (ed.) (ed.), Comprehensive Biotechnology. Science Direct. https://doi.org/10.1016/b978-0-08-088504-9.00376-7

Stenuit, B., & Agathos, S. N. (2011). Biodegradation and bioremediation of TNT and other nitro explosives. In M. Moo Young (ed.), Comprehensive Biotechnology, Second Edition, Volume 6 - Environmental Biotechnology and Safety (p. p. 167-181). Elsevier Science Publishers. https://doi.org/10.1016/B978-0-12-409548-9.00364-X

Stenuit, B., & Agathos, S. N. (2010). Microbial 2,4,6-trinitrotoluene degradation: could we learn from (bio)chemistry for bioremediation and vice versa? Applied Microbiology and Biotechnology, 88(5), 1043-1064. https://doi.org/10.1007/s00253-010-2830-x (Original work published 2010)

George, I., Stenuit, B., & Agathos, S. N. (2010). Application of Metagenomics to Bioremediation. In Marco Diana (ed.) (ed.), Metagenomics Theory, Methods and Applications (p. p. 119-140). Caister academic press.

Stenuit, B., Eyers, L., Schuler, L., George, I., & Agathos, S. N. (2009). Molecular Tools for Monitoring and Validating BioremediationSoil Biology, 1, Volume 17, Advances in Applied Bioremediation, Pages 339-353. In Singh, Ajay; Kuhad, Ramesh C.; Ward, Owen P. (Eds.) (ed.), Advances in Applied Bioremediation Soil Biology (p. p. Volume 17, 339-353). Springer Verlag,. https://doi.org/10.1007/978-540-89621-0_1

Stenuit, B., Eyers, L., Rozenberg, R., Habib Jiwan, J.-L., Matthijs, S., Cornelis, P., & Agathos, S. N. (2009). Denitration of 2,4,6-trinitrotoluene in aqueous solutions using small-molecular-weight catalyst(s) secreted by pseudomonas aeruginosa ESA-5. Environmental Science & Technology (Washington), 43(6), 2011-2017. https://doi.org/10.1021/es8024319 (Original work published 2009)

Stenuit, B., & Agathos, S. N. (2009). Rapid and unbiased colorimetric quantification of nitrite and ammonium ions released from 2,4,6-trinitrotoluene during biodegradation studies: Eliminating interferences. International Biodeterioration and Biodegradation, 63(1), 116-122. https://doi.org/10.1016/j.ibiod.2008.09.001 (Original work published 2009)

Stenuit, B., & Agathos, S. N. (2009). Multiple biodegradation pathways of 2,4,6-trinitrotoluene (TNT) catalyzed by P. aeruginosa, Poster (http://genomics1.mh-hannover.de/pseudomonas2009/index). XII. International Conference “Pseudomonas 2009”, Hannover, Germany.

Stenuit, B., Eyers, L., Agathos, S. N., & George, I. (2008). High-throughput approaches to analyse waste biotreatment in confined environments. In Diaz, E. (Ed.), (ed.), Microbial Biodegradation: Genomics and Molecular Biology (p. p. 319-358). Caister Academic Press.

Eyers, L., & Agathos, S. N. (2008). Denitration of 2,4,6-trinitrotoluene by Pseudomonas aeruginosa ESA-5 in the presence of ferrihydrite. Applied Microbiology and Biotechnology, 79(3), 489-497. https://doi.org/10.1007/s00253-008-1434-1 (Original work published 2008)

George, I., Eyers, L., Stenuit, B., & Agathos, S. N. (2008). Effect of 2,4,6-trinitrotoluene on soil bacterial communities. Journal of Industrial Microbiology and Biotechnology, 35(4), 225-236. https://doi.org/10.1007/s10295-007-0289-2 (Original work published 2008)

Stenuit, B., Eyers, L., Schuler, L., Agathos, S. N., & George, I. (2008). Emerging high-throughput approaches to analyze bioremediation of sites contaminated with hazardous and/or recalcitrant wastes. Biotechnology Advances : research reviews, 26(6), 561-575. https://doi.org/10.1016/j.biotechadv.2008.07.004 (Original work published 2008)

Agathos, S. N., Stenuit, B., Eyers, L., Rozenberg, R., & Habib Jiwan, J.-L. (2007). Why on earth would Escherichia coli attack a high explosive ? Invited lecture presented at the 6th International Symposium on Industrial Microbiology and Biotechnology in Honor of Professor Arnold Demain, Stata Center, Massachusetts Institute of Technology, Cambridge, MA, USA.

Eyers, L., Stenuit, B., Rozenberg, R., Habib Jiwan, J.-L., & Agathos, S. N. (2006). Denitration of 2,4,6-trinitrotoluene by a periplasmic extract from Pseudomonas aeruginosa. International Symposium on Environmental Biotechnology (International, European & Japanese Symposium: ISEB-ESEB-JSEB), Leipzig, Germany.

Stenuit, B., Eyers, L., & Agathos, S. N. (2006). Isolation of a Pseudomonas aeruginosa ESA-5 strain that denitrates 2,4,6-trinitrotoluene. 2nd FEMS Congress of European Microbiologists Integrating Microbial Knowledge into Human Life, Book of Abstracts, Madrid, Spain.

Stenuit, B., Eyers, L., Rozenberg, R., Habib Jiwan, J.-L., & Agathos, S. N. (2006). Aerobic metabolism of 2,4,6-trinitroptoluene by Escherichia coli: Evidence of high TNT denitration with whole cells and cell-free extracts. International Symposium on Environmental Biotechnology (International, European & Japanese Symposium: ISEB-ESEB-JSEB), Book of Abstracts, Leipzig, Germany.

Stenuit, B., Agathos, S. N., Eyers, L., Rozenberg, R., & Habib Jiwan, J.-L. (2006). Aerobic growth of Escherichia coli with 2,4,6-trinitrotoluene (TNT) as the sole nitrogen source and evidence of TNT denitration by whole cells and cell-free extracts. Applied and Environmental Microbiology, 72(12), 7945-7948. https://doi.org/10.1128/AEM.01052-06 (Original work published 2006)

Stenuit, B., Eyers, L., El Fantroussi, S., & Agathos, S. N. (2005). Promising strategies for the mineralisation of 2,4,6-trinitrotoluene. Reviews in Environmental Science and Biotechnology, 4(1-2), 39-60. https://doi.org/10.1007/s11157-005-5515-7 (Original work published 2005)

Eyers, L., Stenuit, B., El Fantroussi, S., & Agathos, S. N. (2004). Microbial characterization of TNT-contaminated soils and anaerobic TNT degradation: high and unusual denitration activity. Proceedings of the European Symposium on Environmental Biotechnology, ESEB 2004, Ostende, Belgique.

George, I., Eyers, L., Stenuit, B., Agathos, S. N., & El Fantroussi, S. (2004). Impact of long-term contamination with 2,4,6-trinitrotoluene (TNT) on soil microbial communities. Poster n°35-ENV, Book of Abstracts p. 34. Annual Symposium of the Belgian Society for Microbiology, Brussels, Belgium.

Stenuit, B., Eyers, L., El Fantroussi, S., & Agathos, S. N. (2004). Construction of a metagenomic library derived from soil contaminated by 2,4,6 trinitrotoluene: Screening for catabolic genes conferring productive biodegradation of TNT. European Science Foundation (ESF) Workshop “Environmental Genomics and Environmental Metagenomics”, Poster No. 28, Book of Abstracts p. 62, Granada, Spain.

George, I., Eyers, L., Stenuit, B., Agathos, S. N., & El Fantroussi, S. (2004). Impact of long-term contamination with TNT on soil microbial communities, (ISME-10 “Microbial Planet: Sub-Surface to Space”). Poster n° 107, Book of Abstracts p. 46. 10th International Symposium on Microbial Ecology, Cancun, Mexico.

El Fantroussi, S., Eyers, L., Stenuit, B., George, I., & Agathos, S. N. (2004). Denitration of 2,4,6-trinitrotoluene using enrichment cultures and metagenomic libraries. ISME-10 “Microbial Planet: Sub-Surface to Space”). Poster n° 226, Book of Abstracts p. 185. 10th International Symposium on Microbial Ecology, Cancun, Mexico.

Eyers, L., George, I., Schuler, L., Stenuit, B., Agathos, S. N., & El Fantroussi, S. (2004). Environmental genomics : exploring the unmined richness of microbes to degrade xenobiotics. Applied Microbiology and Biotechnology, 66(2), 123-130. https://doi.org/10.1007/s00253-004-1703-6 (Original work published 2004)

Eyers, L., Stenuit, B., El Fantroussi, S., & Agathos, S. N. (2003). Microbial ecology of TNT-contaminated soils and anaerobic TNT biodegradation processes. FEMS Congress of European Microbiologists, Poster. FEMS Abstracts, p. 218 (Abstract No. P4-100), Ljubljana, Slovénie.

El Fantroussi, S., Eyers, L., Stenuit, B., & Agathos, S. N. (2003). Microbial Ecology of TNT-contaminated soils, Poster. Gordon Research Conference on Applied and Environmental Microbiology. Connecticut College, New London, CT, USA.

Eyers, L., Stenuit, B., El Fantroussi, S., & Agathos, S. N. (2003). Microbial ecology of TNT-contaminated soils and anaerobic TNT biodegradation processes. 103rd ASM general meeting of the American Society for Microbiology, Poster. ASM Abstracts, p. 470 (Abstract No. Q-296), Washington, USA.

Eyers, L., Stenuit, B., El Fantroussi, S., & Agathos, S. N. (2003). Microbial ecology of TNT-contaminated soils and anaerobic TNT biodegradation processes, Poster. PhD-Day of Université Catholique de Louvain, Louvain-la-Neuve, Belgium.