Spyridon Agathos

Recherche fondamentale et appliquée dans les domaines suivants: - catalyse enzymatique et stabilisation d'enzymes - optimisation de bioprocédés pour la production de molécules d'intérêt pharmaceutique, nutrititif ou industriel à  partir de bactéries, de champignons et d'algues - conception, analyse et développement de bioréacteurs pour la production de protéines recombinantes au moyen de cellules animales - propagation et différenciation contrôlées de cellules souches en bioréacteur - biodégradation des polluants toxiques et bioremédiation - biotechnologie pour le développement durable.

Profil Google Scholar:  https://scholar.google.com/citations?hl=en&user=Wzb30QQAAAAJ

Citations: 14015           h-index: 61

SCIENTIFIQUES POSTDOCTORAUX ET VISITEURS FORMÉS

Western University (U. Western Ontario)

1. Dr. Elias Nerantzis, 1984 “Inoculum Development of Tolypocladium inflatum”. 
2. Dr. Catherine Moraiti, 1984-85 NATO Fellow, “C- and N-Sources in Cyclosporine Fermentations”. 
3. Dr. Rannade Parekh, 1984-86 “Genetic Improvement of Tolypocladium inflatum”. 

Rutgers – The State University of New Jersey

4. Dr. Mohammed Saeed, 1988 “Extracellular Polysaccharides in Cyclosporine Fermentations”. 
5. Dr. Nandita Baidyaroy, 1988 “Metal Ions in Cyclosporine Fermentations”. 

Université catholique de Louvain

6. Dr. Maria Kosseva, 1995-96 “Nitroaromatic Degradation by Immobilized Cells”. 
7. Dr. Philippe Ledent, 1996-99 “Wastewater Cleanup using Enzyme-Bacterial Complexes”. 
8. Dr. Francis Verhoeye, 1998-99 “The Elimination of N-Glycolylneuraminic Acid Residues in Recombinant Glycoproteins”; 1999-02, “New System for the Production of Recombinant Glycoproteins in High-Cell Density Perfusion Bioreactors”. 
9. Dr. Rachid El Mamouni, 1999-01 “In Situ Bioremediation of Soil Contaminated with Chlorinated Ethenes and Nickel; Demonstration of Cleanup by Anaerobic Bacteria”. 
10. Dr. Ivana Sokolovska, 2000-02 “Utilisation of Psychrophilic Bacteria for Bioremediation of Soil Contaminated by Polycyclic Aromatic Hydrocarbons”; 2002-04, “Use of Bioavailability Promoting Organisms to Decontaminate PAH-Polluted Soils: Preparation towards Large Scale Field Exploitation”. 
11. Dr. Dirk Wesenberg, 2000-02 “Innovative Process of Biodegradation of Industrial Dyes Using Fungal Strains”. 
12. Dr. Pierre Wattiau, 2000-03 “Use of Bioavailability Promoting Organisms to Decontaminate PAH-Polluted Soils: Preparation towards Large Scale Field Exploitation”. 
13. Dr. Saïd El Fantroussi, 2002-05 "Molecular and Engineering Approach to Anaerobic Degradation of Recalcitrant Xenobiotic Compounds: In Situ Removal of Nitro- and Aminoaromatic Chemicals". 
14. Dr. George Aggelis (Visiteur, U. Patras, Grèce) 2004 "Microbial Biotechnology".
15. Dr. Isabelle F. George, 2004-09 “Study of Microbial Diversity in Soils and Evaluation of the Taxonomic and Physiological Importance of the Acidobacteria Phylum”; 2009-10 “Metagenomics for Bioexploration”. 
16. Dr. Charles Junghanns, 2008-10 “Insolubilized Oxizymes: Innovative Biocatalysts for Industry and the Environment”; 2010-11 “Efficient Photobioreactors for the Production of High Added Value Molecules”; 2011-12 “Microorganism and Enzyme Immobilization for Upgraded Remediation”. 
17. Dr. Rakesh R. Nair, 2009-2014 “The Potential of White Rot Fungal Oxidative Enzyme Systems for Removal of Organic Micropollutants”. 
18. Dr. Atef Jaouani, 2009-10, “Fungal Laccases: Production and Biotechnological Applications”. 
19. Dr. Clayton Jeffryes, 2009-present, “Microalgae Cultivation in Novel Photobioreactors”, “Sustainable Cultivation of Marine Organisms for Bioactive Molecules” and “Photosynthetic Biorefinery – Fundamental Aspects”. 
20. Dr. David Moreels, 2010-11, “Metagenomics for Bioexploration”. 
21. Dr. Jian Li, 2011-2013, “Microalgae Cultivation in Novel Photobioreactors”. 
22. Dr. Eirini Velliou, 2012, “Development of Hybrid Photosynthetic Materials by Microalgae Encapsulation”. 
23. Dr. Inés Ardao Palacios, 2012-2014, “Microorganism and Enzyme Immobilization for Upgraded Remediation”. 
24. Dr. Giovanni Colica, 2013-2014, “Sustainable Cultivation of Marine Organisms for Bioactive Molecules”. 
25. Dr. Michal Bochenek, 2013-2016, “Development of Hybrid Photosynthetic Materials by Microalgae Encapsulation”.
26. Dr. Benoît Stenuit, 2013-2017, “Molecular Systems Synecology Applied to Microbial Communities Involved in Biodegradation Processes”.
27. Dr. Katholiki Skopelitou, 2013-2016, “Isolation and Characterization of Fungal Strains and Fungal-Bacterial Consortia for Bioremediation”.  
28. Dr. Caroline Zaoui, 2014-2017, “Mycoremediation of Sites Affected by Complex Pollution”.  

THÈSES DE DOCTORAT PROMUES

Rutgers – The State University of New Jersey

1. Jaegwan Lee, Ph.D., August 1989, “Physiological Factors in Cyclosporin A Production by Tolypocladium inflatum – Experimental and Mathematical Modeling”.
2. Gie-Taek Chun, Ph.D., January 1992, “Comparative Bioreactor Studies of Suspended and Immobilized Cell Systems for Optimal Production of Cyclosporin A”
3. Eock-Kee Hong, Ph.D., January 1992, “Plasmid Propagation and Heterologous Gene Expression in Recombinant Yeast” (Co-supervisor: A. Constantinides).
4. William T. Hensler, Ph.D., January 1994, “Growth, Infectivity, and Recombinant Protein Expression in Insect Cell Culture”.

Université catholique de Louvain

5. Saïd El Fantroussi, Ph.D., May 1997, “Introduction of Anaerobic Bioremediation Activities in Soil: From Laboratory Bench Scale to Pilot Soil Bioreactor” (Co-supervisor: H. Naveau).
6. Caroline M. Perès, Ph.D., November 1998, “Improved Biodegradation of Nitroaromatic Compounds: Degradation of a Nitroaromatic Compound together with the Aminoaromatic Derivative Produced by its Reduction”.
7. Victor Alejandro Achà Fuertes, Ph.D., June 1999, “Development of a FTIR Sensor for Monitoring and Modelling an Anaerobic Dechlorinating Bioreactor” (Co-supervisor: H. Naveau).
8. Sébastien Goux, Ph.D., March 2000, “Biodegradation of Atrazine by Soil Microorganisms: Molecular Aspects and Potential Use in Bioremediation” (Co-supervisor: L. Pussemier).
9. Benoît Van Aken, Ph.D., November 2000, “Biodegradation of 2,4,6-Trinitrotoluene (TNT) by White-Rot Fungi”.
10. Lacina Coulibaly, Ph.D., January 2002, “Bioconversion of macromolecules in a reactor simulating plug flow in transient regime: case of bioremediation of synthetic wastewater by Aspergillus niger”.
11. Laertis Ikonomou, Ph.D., June 2002, “Development of High-Density Systems for the Production of Recombinant Proteins by Insect Cells” (Co-supervisor: G. Bastin).
12. Johann Mols, Ph.D., July 2004. “Cultivation of Chinese Hamster Ovary (CHO) Cells in Protein-Free Media Supplemented with Plant Peptones is Sufficient to Prevent Proteolysis of Secreted Rcombinant Glycoproteins” (Co-supervisor: Y.-J. Schneider).
13. Jan Dries, Ph.D., September 2004. “Development and Comparison of Different Multiple Permeable Reactive Barrier (MPRB) Concepts for the Treatment of Groundwater Contaminated by Pollutant Mixtures” (Co-supervisors: L. Bastiaens & D. Springael).
14. Laurent Eyers, Ph.D., January 2007. “Characterization of Bacterial Populations of 2,4,6-Trinitrotoluene (TNT) Contaminated Soils and Isolation of a Pseudomonas aeruginosa Strain with TNT Denitration Activities”.
15. Jean-Christophe Drugmand, Ph.D., February 2007. “Characterization of Insect Cell Lines Is Required for Appropriate Industrial Processes – Case Study of High-Five Cells for Recombinant Protein Production” (Co-supervisor: Y.-J. Schneider
16. Luc Schuler, Ph.D., December 2007. “Identification of Genes Involved in the Degradation of Polycyclic Aromatic Hydrocarbons by Two Sphingomonas spp”.
17. Hubert Cabana, Joint Ph.D. (Catholic University of Louvain and University of Sherbrooke, Québec, Canada), April 2008. “Elimination of the endocrine disruptors nonylphenol, bisphenol A and triclosan by the oxidative action of the laccase from Coriolopsis polyzona” (Co-supervisor: J.P. Jones).
18. Benoît Stenuit, Ph.D., November 2009. “Biological degradation of 2,4,6 – Trinitrotoluene (TNT): Bioprospecting for TNT-denitrating bacteria and deciphering of multiple TNT denitration pathways”.
19. Jean-François Michiels, Ph.D., May 2011. “Investigation of the role of peptones in animal cell culture: Case study of a commercial soy peptone in a CHO cell serum-free medium” (Co-supervisor: Y.-J. Schneider).
20. Sébastien Sart, Ph.D., August 2011. “Controlled expansion and differentiation of mesenchymal stem cells in microcarrier-based stirred bioreactors” (Co-supervisor: Y.-J. Schneider).
21. Leticia Isabel Ramirez Cavazos, Ph.D., May 2014. “Thermostable laccases from Pycnoporus sanguineus CS43, production enhancement, purification and characterization” (Co-supervisor: Roberto Parra Saldivar, Instituto Tecnologico de Monterrey, Mexico).
22. Philippe Demarche, Ph.D., May 2014. “Immobilized phenoloxidases in reactors for the oxidation of aquatic contaminants of emerging concern. Towards a scalable industrial system”.
23. Borhane Samir Grama, Ph.D., June 2014. “Production of high added value molecules by microalgae isolated from the Algerian Sahara: optimization of culture conditions and of induction parameters” (Co-supervisor: Douadi Khelifi, University of Constantine I, Algeria).
24. Emna Bouhajja, Ph.D., November 2014. “Development and application of metagenomic tools for characterization of toluene degradation in hydrocarbon-contaminated sediments”.
25. Guilherme Inocêncio Matos, Ph.D., July 2016. “Evaluation of cultivable microbial community and biodegrading activity in the bioremediation of soils contaminated with diesel and B5 biodiesel (B100)” (“Avaliação da comunidade microbiana cultivabel e atividade biodegradadora na biorremediação de solos contaminados com diesel B5 e biodiesel (B100)”) (Co-supervisors: Eliana Flávia Camporese Sérvulo, Federal University of Rio de Janeiro (UFRJ), Brazil and Márcia Teresa Soares Lutterbach, National Institute of Technology (INT), Brazil).
26. Floriana Augelletti, Ph.D., August 2019. “Steering Biodiversity to Optimize Microbial Community Function”.

THÈSES DE MAÎTRISE, D.E.A. ET AUTRES MÉMOIRES 3ème CYCLE PROMUS

Western University – U. Western Ontario

1. J. Wayne Marshall, M.E.Sc., February 1986, “Factors for the Process Development of Cyclosporine Fermentations”.
2. James C. Tasker, M.E.Sc., September 1986, “Studies on the In Vivo Stabilization of Gramicidin S Synthetase”.

Rutgers – The State University of New Jersey

3. Gie-Taek Chun, M.Sc., October 1988, “Immobilization of Tolypocladium inflatum Conidiospores for Production of the Immunosuppressive Agent Cyclosporine”.
4. Teija H. Aarnio, M.Sc., June 1989, “Biotechnological Exploitation of Tolypocladium inflatum as a Producer of Immunosuppressive and Entomocidal Compounds”.
5. Juan A. Rios del Prado, M.Sc., October 1989, “Effect of Oxygen on the Production of Cyclosporin A by Tolypocladium inflatum”.
6. Barbro Melgert, M.Sc., June 1992 (Netherlands Honors Research Exchange) “Extraction of Cyclosporin by Solvents and Supercritical CO₂” (joint with University of Groningen, The Netherlands).

Université catholique de Louvain

7. Benoît Van Aken, M.Sc. Bioengineering 1994, “Biodegradation of TNT by the White-Rot Basidiomycete P. chrysosporium”.
8. Véronique Simonart, M.Sc. Bioengineering 1994, “Biodegradation of 2,4-Dinitrotoluene by Bacterial Consortia: Comparison of Aerobic and Anaerobic Processes” (“Biodégradation du 2,4-dinitrotoluène par des consortia bactériens: Comparaison des processus anaérobie et aérobie”).
9. Caroline Hennaut, M.Sc. Bioengineering 1995, “Metabolic Pathway of Degradation of Carbon Tetrachloride by an Anaerobic Microbial Consortium Consortium” (“Voie métabolique de dégradation du tétrachlorure de carbone par un consortium microbien anaérobie”).
10. Lucien Ricchiuto, M.Sc. Bioengineering 1995, “Optimization of the Biotransformation of 2,4-Dinitrotoluene by a Bacterial Consortium under Aerobiosis” (“Optimisation de la biotransformation du 2,4-dinitrotoluène par un consortium bactérien en anaérobiose”).
11. Marc Bieswal, M.Sc. Chemical Engineering 1995, “Mathematical Modeling of Wastewater Treatment Plants by Activated Sludge according to the System Unitank”.
12. Fabrice Vandermesse, M.Sc. Applied Natural Sciences 1996, “Capacity of a Mixed Microbial Community to Degrade Methyl Ethyl Ketone in Batch for Bioreactor Optimization” (“Capacité d'une communauté microbienne mixte à dégrader la methyl ethyl kétone en réacteur batch en vue de l'optimisation d'un bioréacteur”).
13. Koen Smets, M.Sc. Applied Natural Sciences 1997, “Bioremediation of Soils Polluted by Organochlorine Compounds in a Pilot Anaerobic Reacrtor” (“Bioremédiation de sols pollués par des organochlorés en réacteur pilote anaérobie”).
14. Henri Michels, M.Sc. Applied Natural Sciences 1997, “Biological Treatment of Sewage: Action of an Enzyme-Bacterial Complex” (“Traitement biologique des eaux d’égouts : l’action d’un complexe enzymo-bactérien”).
15. Chafik Azmy, M.Sc. Applied Natural Sciences 1997, “Study of the Degradation of 2,4,6-Trinitrotoluene as a Function of Pellet Size of the ‘White-Rot’ Basidiomycete P. chrysosporium” (“Etude de la dégradation du 2,4,6-trinitrotoluène en fonction de la taille des pelotes du ‘white- rot’ basidiomycète P. chrysosporium”).
16. Olga-Birgit Vounaki, M.Sc. Bioengineering 1998, “Biological Treatment of Sewage by Means of an Enzyme-Bacterial Complex: Development of a Model Reactor” (“Traitement biologique des eaux d’égout au moyen d’un complexe enzymo-bactérien : mise au point d’un réacteur modèle”).
17. Xénia Gascón i Tomás, M.Sc. Chemical Engineering 1998, “Design, Construction and Modeling of a Pilot Sewer Reactor” (“Conception, construction et modélisation d’un réacteur pilote-égout”) (joint with Universitat de Lleida, Spain).
18. Jean-Jacques Evina, M.Sc. Bioengineering 1998, “Comparative Study of the Kinetics of Degradation of Organic Pollutants in Urban Wastewater by Two Strains of Aspergillus: Aspergillus niger MUCL 28817 and Aspergillus oryzae VTT 85248” (“Etude comparée des cinétiques de dégradation des polluants organiques présents dans les eaux résiduaires urbaines par deux souches d’Aspergillus: Aspergillus niger MUCL 28817 et Aspergillus oryzae VTT 85248”).
19. Abdelslam Mahtour, DES (= Diplôme d’Études Spécialisées, Specialized Master’s) Hydrology 1998, "Biological Treatment of Urban Wastewater: action of hydrolases on the growth of activated sludge" (“Traitement biologique des eaux usées urbaines: action d’hydrolases sur la croissance des boues activées”).
20. Sophie Oger, M.Sc. Bioengineering 1999, “Control of wastewater treatment by UV-VIS spectrophotometry” (“Contrôle de l’épuration des eaux usées par spectrophotométrie UV-VIS ”).
21. Jerôme Bindelle, M.Sc. Chemical Engineering 1999, “Simulation and pilot reactor study of the effect of adding an enzyme complex on wastewater degradation in sewers” (“Simulation et étude en réacteur pilote de l’effet de l’adjonction d’un complexe enzymatique sur la dégradation des eaux usées en égout”).
22. Lacina Coulibaly, DEA (= Diplôme d’Études Approfondies, Advanced Master’s) Bioengineering 1999, “A new tanks-in-series bioreactor to simulate macromolecular wastewater pretreatment under sewer conditions by Aspergillus niger”.
23. Valérie Baton, M.Sc. Bioengineering 2000, “Bioremediation of a soil contaminated with trichlorethylene. Influence of sulfate-reducing bacteria” (“Bioremédiation d’un sol contaminé par du trichloroéthylène. Influence des bactéries sulfato-réductrices”).
24. Jean-Christophe Drugmand, M.Sc. Bioengineering 2000, “Comparative study of the immobilization of insect cells to produce heterologous proteins” (“Etude comparative de l’immobilisation de cellules d’insectes en vue de produire des hétéroprotéines”).
25. Olivier Duez, M.Sc. Bioengineering 2000, “Application of UV-Vis-NIR spectrometry to the characterization of wastewater: determination of protein and polysaccharide content” (“Application de la spectrométrie UV-Vis-NIR à la caractérisation des eaux résiduaires: dosage du contenu protéique et polysaccharidique”).
26. Benoît Englebert, M.Sc. Bioengineering 2000, “Effect of enzyme addition on the properties of activated sludge: laboratory results and discussion” (“L’effet de l’ajout d’enzymes sur les propriétés des boues activées: résultats de laboratoire et discussions”).
27. Grégory Fabry, M.Sc. Bioengineering 2000, “Decontamination of soil polluted with trichloroethylene : interest of bioaugmentation” (“Décontamination d’un sol pollué par le trichloroéthylène : intérêt d’une bioaugmentation”).
28. Pierre-Antoine Mariage, M.Sc. Bioengineering 2000, “Development and optimization of serum-free culture media for culturing cell line CHO K1 in suspension and on microcarriers” (“Développement et optimisation de milieux nutritifs dépourvus de sérum pour cultiver la lignée cellulaire CHO K1 en suspension et sur microporteurs”).
29. Nadine Questiaux, M.Sc. Bioengineering 2000, “Study of the dissolved CO₂ content in a stirred bioreactor” (“Étude de la teneur en CO₂ dissous dans un bioréacteur parfaitement agité”) (co-supervisor with Dr. Eric De Buyl).
30. Sabrina Vandeplas, M.Sc. Bioengineering 2000, “Optimization of the growth of cell line CHO-UH1 (Universal Host-1) in shake flasks and in bioreactors in the presence of serum-free medium” (“Optimisation de la croissance de la lignée CHO-UH1 (Hôte Universel-1) en flacons agités et en bioréacteur en présence de milieu dépourvu de sérum”).
31. Maria Patricia Hurtado, DES (= Diplôme d’Études Spécialisées, Specialized Master’s) Environmental Science & Management 2001, “Use of oxidative enzymes in applied biotechnology”. (“L’utilisation des enzymes oxydatives en biotechnologie appliquée”).
32. Estelle Reter, DES (= Diplôme d’Études Spécialisées, Specialized Master’s) Environmental Science & Management 2001, “Study and improvement of industrial water” (“Etude et amélioration des rejets en eaux industrielles”).
33. Michael Gielen, M.Sc. Bioengineering 2001, “Potential of enzymes in the treatment of sewage sludge: The case of the proteases” (“Potentialités des enzymes dans le traitement des boues d’épuration: Cas des protéases”) (co-supervisor with Prof. Patrick Gerin).
34. Samuel Caillou, M.Sc. Bioengineering 2001, “The ligninolytic system of the fungal strain TV17 and its ability to degrade textile dyes” (“Le système ligninolytique de la souche fongique TV17 et ses capacités à dégrader des colorants textiles”).
35. Sébastien Ballez, M.Sc. Bioengineering 2001, “Bioengineering of CHO-320 cells. Study of the growth and the production of gamma-interferon in the presence of a culture medium devoid of animal proteins” (“Bioingénierie des cellules CHO-320. Etude de la croissance et de la production d’interféron-gamma en présence de milieu nutritif dépourvu de protéines animales”) (co-supervisor with Prof. Yves-Jacques Schneider).
36. Séverine Lenglois, M.Sc. Bioengineering 2001, “Influence of the composition of the culture medium on the energy metabolism of CHO (Chinese Hamster Ovary) cells grown in the absence of serum” (“Influence de la composition du milieu nutritif sur le métabolisme énergétique de cellules CHO (Chinese Hamster Ovary) cultivées en l’absence de sérum”) (co-supervisor with Prof. Yves-Jacques Schneider).
37. Christelle Desmet, M.Sc. Bioengineering 2002, “The potential of enzymes in the treatment of sewage sludge: the fate of enzymes in secondary sludge” (“La potentialité des enzymes dans le traitement des boues d’épuration: le devenir des enzymes dans les boues secondaires”).
38. Delphine Hanus, M.Sc. Bioengineering 2002, “Participation in the study of genes involved in the fluorene degradation pathway by Sphingomonas sp. LB126” (“Participation à l’étude des gènes impliqués dans la voie de dégradation du fluorène par Sphingomonas sp. LB126”).
39. Heike Zimmermann, M.Sc. Bioengineering 2002, “Preliminary study of the removal of a recalcitrant pollutant by a combined microbiological/electrochemical method ” (“Étude préliminaire de l’enlèvement d’une pollution récalcitrante par une méthode combinée microbiologique/électrochimique”) (co-supervisor with Prof. Patrick Gerin).
40. Benoît Stenuit, M.Sc. Bioengineering 2003, “Characterization of microbial ecology of soils contaminated with 2,4,6-trinitrotoluene (TNT) and attempted anaerobic bioremediation in the presence of different electron acceptors” (“Caractérisation de l’écologie microbienne de sols contaminés par le 2,4,6-trinitrotoluène (TNT) et tentative de bioremédiation anaérobie en présence de différents accepteurs d’électrons”).
41. Jean-François Michiels, M.Sc. Bioengineering 2003, “Optimization of feeding strategies for the production of heterologous proteins in cultures using insect cell-baculovirus systems” (“Optimisation des stratégies d’alimentation pour la production de protéines hétérologues dans les cultures utilisant les systèmes cellules d’insecte-baculovirus”) (co-supervisor with Prof. Yves-Jacques Schneider).
42. Valérie Perpette, M.Sc. Bioengineering 2003, “Characterization of cell death in insect cells Spodoptera frugiperda and Trichoplusia ni” (“Caractérisation de la mort cellulaire chez les cellules d’insecte Spodoptera frugiperda et Trichoplusia ni”).
43. Luc Schuler, M.Sc. Biology 2003, “Characterization of mutants of Sphingomonas sp. LB126 affected in the pathway of fluorene degradation” (“Caractérisation des mutants de Sphingomonas sp. LB126 touchés dans la voie de dégradation du fluorène”) (co-supervisor with Prof. Pascal Hols).
44. Michaela Findova, M.Sc. Chemical Engineering 2003 (CEE Socrates Program), “Microbial Degradation of Polycyclic Aromatic Hydrocarbons” (co-supervisor with Prof. Katarina Dercova, Slovak Technical University, Bratislava, Slovakia).
45. Maria Pouli, DEA (= Diplôme d’Études Approfondies, Advanced Master’s) Bioengineering 2004, “Degradation of polycyclic aromatic hydrocarbons by bacteria isolated from contaminated sites: the effect of co-substrate”.
46. Quentin Kevers, M.Sc. Bioengineering 2004, “Actinomycetes as bioremediation agents of linear, branched and aromatic hydrocarbons” (“Les actinomycètes comme agents de bioremédiation des hydrocarbures linéaires, branchés et aromatiques”).
47. Nathalie Scuttenaire, M.Sc. Chemical Engineering 2004, “Biodegradation of an industrial water; study at reduced scale and modeling” (“Biodégradation d’une eau industrielle; étude à échelle réduite et modélisation”).
48. Hubert Cabana, M.Sc. Chemical Engineering 2004, “Elimination of the estrogenic activity of nonylphenol ethoxylates and their metabolites using chemical and biological oxidation” (“Élimination de l'activité oestrogénique des nonylphénols éthoxylés et de leurs métabolites à l'aide d'oxydation chimique et biologique”) (co-supervisor with Prof. J. Peter Jones, University of Sherbrooke, Canada).
49. Bénédicte Mangeot, DES (= Diplôme d’Études Spécialisées, Specialized Master’s) Environmental Science & Management 2004, “Evaluation of the quality of receiving water: the case of the Vogian watersheds” (“Évaluation de la qualité du milieu récepteur aquatique: cas de bassins versants Vosgiens”). (Co-supervisor with Prof. Patrick Gerin).
50. Luc Schuler, DEA (= Diplôme d’Études Approfondies, Advanced Master’s) Biology 2005, “Identification of genes involved in the degradation of PAHs and other xenobiotics” (co-supervisor with Dr. Pascal Hols).
51. Benoît Stenuit, DEA (= Diplôme d’Études Approfondies, Advanced Master’s) Bioengineering 2005, “Bioremediation of sites contaminated with 2,4,6-trinitrotoluene (TNT): biological denitration of TNT as a key step in the mineralization process” (“Bioremédiation de sites contaminés au 2,4,6-trinitrotoluène (TNT): dénitration biologique du TNT comme étape clef dans le processus de minéralisation”).
52. Piseth Hym, DEA (= Diplôme d’Etudes Approfondies, Advanced Master’s) Food Science & Technology 2005, “Use of new bacterial strains for degradation of polycyclic aromatic hydrocarbons (PAHs)” (“Utilisation de nouvelles souches bactériennes pour la dégradation des hydrocarbures aromatiques polycycliques (HAP) ”). (Joint degree between Catholic University of Louvain and Gembloux Faculty of Agronomy).
53. Elisiane De Pril, M.Sc. Bioengineering 2005, “Elimination of the endocrine disruptors bisphenol A and triclosan with laccases from white rot fungi” (“Élimination des perturbateurs endocriniens bisphénol A et triclosan à l’aide de laccases de champignons de la pourriture blanche du bois”). (Co-supervisor with Prof. Michel Penninckx, Free University of Brussels).
54. Émilie Butaye, M.Sc. Bioengineering 2005, “Study of psychrotolerant microorganisms during enrichment and genetic characterization of the alkane degradation mechanism in Rhodococcus erythropolis 24H and E1” (“Étude de microorganismes psychrotolérants lors d’un enrichissement et caractérisation génétique du mécanisme de dégradation des alcanes chez Rhodococcus erythropolis 24H et E1”).
55. Joëlle Pourtois, DES (= Diplôme d’Études Spécialisées, Specialized Master’s) Environmental Science & Management 2005, “Participation in the realization of the study of environmental impact of the intermunicipal public slaughterhouses of Liege and of Waremme SC and its associated enterprises” (“Participation à la réalisation de l’étude d’incidences sur l’environnement de l’intercommunale des abattoirs publics de Liège et de Waremme SC et ses entreprises associées”). (Co-supervisor with Prof. Patrick Gerin).
56. Pierre-Yves Wathour, M.Sc. Chemical Engineering 2005, “Study of environmental parameters on the metabolism and cell growth of lepidoptera cells” (“Étude des paramètres environnementaux sur le métabolisme et la croissance cellulaire des cellules de lépidoptères”).
57. Hubert Cabana, DEA (= Diplôme d’Études Approfondies, Advanced Master’s) Bioengineering 2006, “Elimination of endocrine disrupting substances nonylphenol, bisphenol A and triclosan using laccase from the white rot fungus Coriolopsis polyzona” (co-supervisor with Prof. J. Peter Jones).
58. Céline Alexandre, M.Sc. Bioengineering 2006, “Elimination of the endocrine disruptor bisphenol A with an immobilized laccase from a white rot fungus” (“Élimination du perturbateur endocrinien bisphénol A à l’aide d’une laccase immobilisée provenant d’un champignon de la pourriture blanche du bois”).
59. Axelle Hubert, M.Sc. Bioengineering 2006, “Genetic organization and kinetic trends in the degradation of polycyclic aromatic hydrocarbons (PAHs) by the bacteria Sphingomonas spp.” (“Organisation génétique et tendances cinétiques dans la dégradation des hydrocarbures aromatiques polycycliques (HAP) par des bactéries Sphingomonas spp.”).
60. Pierre Malet, DES (= Diplôme d’Études Spécialisées, Specialized Master’s) Environmental Science & Management 2006, “Analysis and characterization of the liquid effluents of the Catholic University of Louvain” (“Analyse et caractérisation des effluents liquides de l’Université Catholique de Louvain”).
61. Kevin Lemaire, M.Sc. Bioengineering 2007, “Biodegradation of 2,4,6-trinitrotoluene (TNT): Denitration of TNT via a biomimetic system involving phenazine compounds and nicotinamide adenine dinucleotide (NADH)” (“Biodégradation du 2,4,6-trinitrotoluène (TNT) : Dénitration du TNT via un système biomimétique impliquant des composés phénazine et la nicotinamide adénine dinucléotide (NADH)”).
62. Elisa Vecchi, M.Sc. Chemical & Process Engineering 2008 (Erasmus Program), “Physiological and biochemical characterization of aerobic bacteria degrading polycyclic aromatic hydrocarbons for use in soil remediation” (“Caratterizzazione fisiologica e biochimica di batteri aerobi degradanti idrocarburi policiclici aromatici da impiegare nella bonifica dei suoli”) (co-supervisor with Dr. Luc Schuler and Prof. Fabio Fava, joint with University of Bologna, Italy).
63. Philippe Demarche, M.Sc. Bioengineering 2008, “Biological Treatment of Matrices Contaminated by Polycyclic Aromatic Hydrocarbons (PAH)” (“Traitement biologique de milieux contaminés aux hydrocarbures aromatiques polycycliques (HAP))”.
64. Lore Lambein, M.Sc. Biology 2009, “Physiological characterization, degradation test and study catabolic gene study of a bacterial consortium degrading polycyclic aromatic hydrocarbons” (“Caractérisation physiologique, test de dégradation et étude de gène catabolique d’un consortium bactérien dégradant des hydrocarbures aromatiques polycycliques”).
65. Matteo Gigli, M.Sc. Chemical & Process Engineering 2009 (Erasmus Program), “Laccase from Coriolopsis polyzona and its use in cross-linked enzyme aggregates” (co-supervisor with Prof. Fabio Fava, joint with University of Bologna, Italy).
66. Sébastien Stas, Master in Biongineering & Management – Enterprise Creation 2010, “ACTIV’ALGUES: Study of the conditions of industrial production and commercialization of astaxanthin from the alga Haematococcus pluvialis via photobioreactor technology” (“ACTIV'ALGUES: Étude des conditions de production et de commercialisation industrielle de l'astaxanthine issue de l'algue Haematococcus pluvialis via la technologie de photobioréacteur”).
67. Bastien Soete, M.Sc. Chemical Engineering 2010, “Degradation of bisphenol A by an oxidative enzyme in aqueous solution. Kinetic study of the use of Cross-Linked Enzyme Aggregates (CLEAs) of laccase in a membrane reactor”.
68. Diego Christiane, M.Sc. Bioengineering 2011, “Mixotrophic cultivation of Haematococcus pluvialis and Scenedesmus obliquus using glycerol as a carbon source”.
69. Gwennaël Bataille, M.Sc. Biology 2011, “Construction of a metagenomic library from an aquifer contaminated with BTEX” (“Construction d’une banque metagénomique d’un aquifère contaminé au BTEX”).
70. Antoine Vanandruel, M.Sc. Bioengineering 2011, “Improvement of culture conditions of Acidobacteria: Experimental and genomic approaches” (“Amélioration des conditions de culture des Acidobactéries: approches expérimentales et génomiques”).
71. Loïc Bouillet, M.Sc. Bioengineering 2011, “Ecology of Acidobacteria: identification and study of specific physiological properties that may explain their adaptation to the ‘soil’ environment” (“Écologie des Acidobactéries: identification et étude de propriétés physiologiques particulières pouvant expliquer leur adaptation à l’environnement « sol »”).
72. Sophie Buyckx, M.Sc. Bioengineering 2012, “Laccase based packed-bed reactor: Design, Operation and Modeling”.
73. Brieuc Urbain, M.Sc. Bioengineering 2012, “The effect of plantlet mass and cutting on the growth of Ochtodes secundiramea tissue cultures in photobioreactors”.
74. Marisa Stamato, M.Sc. Chemical & Process Engineering 2013 (Erasmus Program), “Modeling, Caracterization and Microalgal Cultivation in a Flat Plate Airlift Photobioreactor” (co-supervisor with Dr. Jian Li and Prof. Fabio Fava, joint with University of Bologna, Italy).
75. Antoine Delhaye, M.Sc. Bioengineering 2014, “Characterization of Carotenogenesis by a New Strain of Scenedesmaceae Microalgae under Stress Conditions”.
76. Anastasia Piltsi, M.Sc. Environmental Engineering 2014 (Erasmus Program), “Degradation of Sulfonamide Antibiotics in Aqueous Matrices” (co-supervisor with Prof. Alexandros Aivasidis, joint with Democritus University of Thrace, Greece).
77. Milena Marysková, M.Sc. Chemical Engineering 2014 (Erasmus Program), “Development of Nanofibrous Membrane Materials for Immobilization of Laccases of Sulfonamide Antibiotics in Aqueous Matrices” (co-supervisor with Dr. Inés Ardao, joint with University of Liberec, Czech Republic).
78. Pierre-Baptiste Rousseau, M.Sc. Bioengineering 2015, “Chitin and lipid production from diatom cell culture under silicon deprivation”.
79. Antonio Ramirez-Guanche, M.Sc. Bioengineering 2015, “Biogeochemical cycling of dimethylsulfoniopropionate using synthetic microbial communities”.
80. Marion Latiers, M.Sc. Bioengineering 2015, “Growth modeling of fragmenting tissue cultures with respect to shear stress and CO₂ input: extraction of growth features with Ochtodes secundiramea and analysis by image processing”.
81. Alexandre le Jeune d'Allegeershecque, M.Sc. Bioengineering 2015, “Carotenogenesis of Coelastrella sp. in response to varying iron concentrations”.
82. Gauthier Hoareau, B.Sc. Chemistry Senior Thesis 2015, “Study of an unconventional patway of nitrogen fixation catalyzed by thermophilic bacteria under aerobic conditions: Physiological and molecular characterization” (“Étude d’une voie non-conventionnelle de fixation de l’azote catalysée par des bactéries thermophiles en condtions aérobies: Caractérisation physiologique et moléculaire”). Co-supervision with Dr. B. Stenuit (Catholic University of Louvain and Higher Education Institute Leonardo Da Vinci, Brussels).
83. Noé Davio, M.Sc. Bioengineering 2016, “Effects of microalgal-bacterial interactions and environmental conditions on the physiology of the haptophyte Emiliania huxleyi producing dimethylsulfoniopropionate (DMSP)”.
84. Diego Bleeckx, M.Sc. Bioengineering 2016, “Synthetic marine microbial communities involved in the cycling of dimethylsulfoniopropionate (DMSP): Diversity, function and robustness”.
85. Oliver Vanweydeveld, M.Sc. Bioengineering 2017, “Molecular characterization and Ecophysiology of fluorine-degrading Sphingomonas sp. Strain LB126”.

PROJETS DE RECHERCHE FINANCÉS 

1. Discovering the diversity of native mycorrhizal fungi in species of agroforestry interest of Ecuador (Cacao, Cedar and Guayusa): a first step towards obtaining biofertilizers and developing sustainable agriculture (‘Descubriendo la diversidad de hongos micorrízicos autóctonos en especies de interés agroforestal del Ecuador (Cacao, Cedro y Guayusa): un primer paso hacia la obtención de biofertilizantes y el desarrollo de una agricultura sustentable’), supported by CEDIA (Ecuadorian Network of Research and Education), 2019-2022
2. Immobilized laccases for the degradation of aromatic compounds in wastewater (‘Lacasas Inmovilizadas para la Degradación de compuestos Aromáticos en aguas residuales’ – ‘LIDA’), supported by CYTED (Ibero-American Program of Science and Technology for Development), 2018-2020
3. Establishing a network of genetics and genomics in Ecuador (‘Red de genética y genómica en el Ecuador’ – ReGG), supported by General Secretariat of Science, Technology and Innovation (SENESCYT), Quito, 2018-2019 (co-PI with J. Reichardt)
4. Removal of nutrients in wastewater treatment via microalgae and biofuel/biomass production for environmental sustainability in Vietnam (‘RENEWABLE’). Research Projects for Development & Projects for Training in the South, supported by ARES (Academy of Research and Higher Education), Wallonia-Brussels Federation, 2016-2020
5. Production of vaccine bio-conjugates for human usage. Project contract n° 7467 under the F.I.R.S.T. – Enterprises Program between UCL and GlaxoSmithKline Biologicals. Operational Directorate N° 6, Walloon Region, 2016-2018
6. Demonstration of the feasibility of mycoremediation of complex pollution. Project contract n° 7301 under the F.I.R.S.T. – Enterprises Program between UCL and Almadius SPRL. Operational Directorate N° 6, Walloon Region, 2014-2016
7. Towards predictive tools of the dynamics and biodegradation potential of aquatic microbial communities in anthropized watersheds (“DYNAMO”). Collaborative Research Project, National Fund for Scientific Research (FNRS), 2014-2018 (Co-Principal Investigator with P. Servais, ULB)
8. Collection, identification and valorization of microalgae from natural resources. Project n°155419. Wallonia Brussels International (WBI) -- Cooperation with China, Ministry of Science and Technology (MOST), 2014-2015
9. Integrated Biotechnological Solutions for Combating Marine Oil Spills (“KILL-SPILL”). FP7 EU Project under grant agreement n° 312139 (F7-KBBE), European Commission, 2013-2016
10. Microbial Resource Management (MRM) in engineered and natural ecosystems (“Micro-Manager”). Inter-University Attraction Pole (IUAP) project n° 27, Belgian Federal Service of Science Policy (BELSPO), 2012-2017
11. Biomimetic cell and enzyme entrapment. Equipment Grant (Credit to Researchers) for ‘Multisizer’ Coulter particle counter. Project n° 1.5158.12, National Fund for Scientific Research (FNRS), 2012-2015
12. The Potential of White Rot Fungi Oxidative Enzyme Systems for Removal of Organic Micropollutants in Urban and Industrial Wastewaters – Phase II (“OXEROM 2”). Project n° IP-Envi 10, Program “Impulsion”, Directorate for Research & Innovation (INNOVIRIS), Brussels Capital Region, 2012-2014
13. Integrated development of hybrid photosynthetic materials by encapsulation of microalgae for the production of high-value metabolites in a photobioreactor (“FOTOBIOMAT”). Project n° 1117323, Walloon Region, Program GREENOMAT, 2011-2015
14. Oxidative Biocatalysis in a Cartridge (“BIOCATRIDGE”). Program Spin-Off in Brussels (SOIB), Directorate for Research & Innovation (INNOVIRIS), Brussels Capital Region, 2011-2013; extension 2013-2014
15. Sustainable Production of Biologically Active Molecules of Marine Based Origin (“BAMMBO”). FP7 EU Project under grant agreement n° 265946 (F7-KBBE), 2011-2014
16. Microorganism and enzyme immobilization: Novel techniques and approaches for upgraded remediation of underground-, wastewater and soil (“MINOTAURUS”). FP7 EU Project n° F7-KBBE-265946, European Commission, 2011-2013
17. Competitiveness and sustainability of Walloon agro-food chains through the establishment of an interdisciplinary platform of expertise for reprocessing their related flows. Walloon Region Grant n° 6089 (“WAL-AID”). Phase II, 2011-2014
18. BioEnergy from Microalgae (“BEMA”). Project n° 6161, Walloon Region, Competitiveness Cluster TWEED, 2009-2013
19. Metagenomics for Bioexploration – Tools and Application (“METAEXPLORE”). Project n° FP7-222625-2, Program “Cooperation”, EU 7th Framework Program, European Commission, 2009-2013
20. The Potential of White Rot Fungi Oxidative Enzyme Systems for Removal of Organic Micropollutants (“OXEROM”). Project n° IP-Envi 10, Program “Impulsion”, Brussels Capital Region, 2009-2012
21. Laccase-nanoparticle conjugates for the treatment of wastewater bioreactor and disposal of chemical compounds acting as endocrine disruptors (“LANCE”). Regional support action n° 917011 within the EU funding scheme ERA-NET Matera (FP7), 2009-2011
22. Competitiveness and sustainability of Walloon agro-food chains through the establishment of an interdisciplinary platform of expertise for reprocessing their related flows. Walloon Region Grant n° 6089 (“WAL-AID”). Phase I, 2009-2011
23. Research Training for Good European Ground Water Resources (“GOODWATER”). Marie Curie Initial Training Network, Project n° FP7-212683-2, EU 7th Framework Program, European Commission, 2008-2012
24. Scaleable Mesenchymal Stem Cell cultivation in Bioreactors, IN-Wallonia-Brussels International Doctoral Fellowship Support (BioWin Cluster), 2008-2011
25. Efficient Bioreactors for the Production of High Added Value Molecules Based on an Innovative Technology of Implementing Nanoporous Materials (“BIOVAMAT”). Project n° 71/6662, Walloon Region, Program WINNOMAT II, 2008-2011
26. Insolubilized Oxizymes: Innovative Biocatalysts for Industry and the Environment (“OXINSOL”). Project n°716617, Walloon Region, FIRST Post-Doc, 2008-2010
27. Innovative Processes for the Bioremediation of Persistent Organic Polutants (POP). Project CFA/VIET/n°1.10. Walloon Region-Brussels Region-French Community of Belgium/Vietnam 2007-2009
28. Microbial Consortia for the Degradation of Polycyclic Aromatic Hydrocarbons (“CONSOHAP”), contract n° 516144, Walloon Region, FIRST Doctorate (DEI) with Agrostar S.A., 2005-2007; Extension, 2007-2009
29. Innovative Agents and Technologies for the Neutralization of Pollutant Mixtures in Soils and Wastewater. Project FC/BUL 2006/00384. Walloon Region-Brussels Region-French Community of Belgium (Cooperation French Community of Belgium – Bulgaria), 2006-2009
30. Study of the Genes Involved in the Degradation of Fluorene by Sphingomonas, contract n° 1.5.278.05 (Credit to Researchers). National Fund for Scientific Research (FNRS), 2005-2007
31. Elimination of the Endocrine Disrupting Substances Nonylphenol, Bisphenol A and Triclosan by Means of Fungal Laccases. Natural Sciences & Engineering Research Council (NSERC, Canada) and Québec Fund for Research on Nature & Technologies (FQRNT) – Doctoral Fellowship Support between Université de Sherbrooke and Université Catholique de Louvain, 2004-2008
32. Bioengineering of Stem Cells: a Prerequisite for Cell Therapy, Project FSR, Université Catholique de Louvain, 2004-2006
33. Innovative Process of Remediation of Polycyclic Aromatic Hydrocarbons. Project 04/13586. Walloon Region-Université catholique de Louvain (Cooperation French Community of Belgium – Vietnam), 2005-2007
34. Development, Analysis and Testing of New Methods of Supervision and Control for On-Line Optimisation of Fed-Batch Enzyme Production, Grant N° 2.4623.04 for Equipment (Credit to Researchers). National Fund of Scientific Research (FNRS), Belgium, 2004-2005 (Co-Principal Investigator with D. Dochain)
35. Genetic Dissection of the Degradation of Fluorene by Sphingomonas, Fund for the Promotion of Research in Industry and Agriculture (FRIA), Doctoral Fellowship Support, 2003-2007
36. Microbial Denitration of Nitroaromatic Explosives, Fund for the Promotion of Research in Industry and Agriculture (FRIA), Doctoral Fellowship Support, 2003-2007
37. Optimisation of Agro-Food Enzyme Production Processes, FSR Project, Université Catholique de Louvain, 2003-2005 (Co-Principal Investigator with D. Dochain)
38. FELBIPUR – Integrated Cleanup of Recalcitrant Industrial Effluents by Electrochemical, Tangential Filtration and Biological Means. Directorate General of Technology, Research and Energy (DGTRE), Grant N° 215168. Walloon Region-Université Catholique de Louvain-Université Libre de Bruxelles, 2003-2005
39. ENVIROFELLOWS – Short Term Exchanges of Early Career Scientists in Environmental Biotechnology between the European Union and the United States. CEE N° QLAM-2001-00292. Programme Quality of Life, EU 5th Framework, European Commission, 2002-2004
40. MADOX – Molecular & Engineering Approach to the Anaerobic Degradation of Organic Xenobiotics. CEE N° QLRT-2001-00345. Coordinator & PI. Program Quality of Life, EU 5th Framework, European Commission, 2002-2005
41. Study of the Physiology of Pseudomonas, Azoarcus anaerobius and Thauera aromatica in the Anaerobic Biodegradation of Amino- and Nitroaromatics. Large Equipment Grant (Credit to Researchers). National Fund of Scientific Research (FNRS), Belgium, 2001-2002
42. Innovative Process of Remediation of Polycyclic Aromatic Hydrocarbons: The Hybrid Biological – Electrochemical Approach. Project 01/11818. Walloon Region-Université Catholique de Louvain (Cooperation French Community of Belgium – Vietnam), 2001-2004
43. Denitrification of Water in Bioreactor Assisted by an Electric Field. Project 01/11981. Walloon Region-Université catholique de Louvain (Cooperation French Community of Belgium – Bulgaria), 2001-2003
44. Bioengineering of Stem Cells. FSR Project, Université Catholique de Louvain, 2002-2004
45. OPTICELL – Development of Cell Culture Systems Optimized and Made Safe for the Bioprocess Industries. Walloon Region, Grant N° 3677 FIRST SPIN-OFF, 2000-2002 (Co-Principal Investigator with Y.-J. Schneider)
46. EASYFORM – Interdisciplinary Integration and Valorisation of Materials Moldable at Low Melting Point. Directorate General of Technology, Research and Energy (DGTRE), Grant N° 14585. Walloon Region-Université Catholique de Louvain-Université de Liège-Université Mons-Hainaut-Université Libre de Bruxelles, 2000-2004
47. Development, Optimisation and Characterisation of a Multifunctional Permeable Barrier Technology for the Removal of Selected Pollutants. Grant N° 99-57 UCL-VITO from Vlaamse Instelling voor Technologisch Onderzoek (VITO), 1999-2003
48. Improvement of the Overall Functioning of Urban and Industrial Wastewater Treatment Plants: Impact of a Solubilisation Treatment Using Enzyme-Bacteria Complexes. Walloon Region, Grant N° 3957 FIRST-Entreprise (Industrial Partner: REALCO), 2000-2002
49. New System of Glycoprotein Production in Perfused Bioreactor at High Cell Density. Directorate General of Technology, Research and Energy (DGTRE), Grant N° 981/3711. Walloon Region-Université Catholique de Louvain-Université de Liège, 1999-2002
50. Psychrophilic Microorganisms, Tools of Choice for Bioremediation. Directorate General of Technology, Research and Energy (DGTRE), Grant N° 991/4213. Walloon Region-Université Catholique de Louvain-Université de Liège, 1999-2002
51. Innovative Process of Biodegradation of Industrial Dyes Using Fungal Strains. Directorate General of Technology, Research and Energy (DGTRE), Grant N° 981/3870. Walloon Region-Université Catholique de Louvain-Université Libre de Bruxelles, 1999-2002
52. Efficient Production of Proteins in Bioreactor: Impact and Control of Oxygen and Carbon Dioxide in the Cell-Baculovirus System. FSR Project, Université Catholique de Louvain, 1999-2001
53. Development and Theoretical Analysis of Supervision and Control Methods of Discrete Parameter Systems. Development and Experimental Validation on a Biological Wastewater Treatment Process. Large Equipment Grant (Fund of Collective Fundamental Research, FRFC). National Fund of Scientific Research (FNRS), Belgium, 1998-2001 (Co-Principal Investigator with D. Dochain)
54. Biological Wastewater Treatment (Reduction of Sludge Volume). Directorate General of Technology, Research and Energy (DGTRE), Grant N° 981/3800. Walloon Region-Université Catholique de Louvain-Université de Liège, 1998-2001
55. CHLOREM – Demonstration Project: In Situ Bioremediation of Soil Contaminated with Chlorinated Ethenes and Nickel, Demonstration of Cleanup by Anaerobic Bacteria. CEE n° BIO4-CT98-0303. Programme BIOTECH, EU 4th Framework, European Commission, 1998-2001
56. Wastewater Treatment Using Enzyme-Bacterial Complexes. Walloon Region, Industry-University Contract N° 3599 (Industrial Partner: REALCO), 1998-2000
57. Elimination of N-Glycolylneuraminic Acid Residues in Recombinant Glycoproteins. Animal Cell Factories RTD Project (Partners: Belgium, France, Italy, United Kingdom). Grant N° BIO4-CT96-0767. Programme BIOTECH, EU 4th Framework, European Commission DG XII, 1997-2000
58. Biological Pre-Treatment of Sewage: an Innovative Technology to Improve the Efficiency of Wastewater Treatment Plants. Walloon Region, Programme FIRST N° 3180 (Industrial Partner: REALCO), 1996-1999
59. Efficient Production of Proteins by Insect Cells in Perfusion Reactor at High Cell Density. FDS Project, Université Catholique de Louvain, 1996-1998
60. Enhanced Biodegradation of Nitroaromatic Compounds. Large Equipment Grant (Credit to Researchers). National Fund of Scientific Research (FNRS) - Loterie Nationale, Belgium, 1994-1995
61. Bioremediation of Nitroaromatic Pollutants. FDS Project, Université Catholique de Louvain, 1993-1995
62. Biodegradation of Nitro-Propellants. US Army, 1992-1993 (general support plus equipment)
63. Antibiotic Fermentation. Bryan Cave, New York 1992-1993
64. Analytical Equipment Grant. Hoffmann LaRoche, Inc., New Jersey, 1993
65. Bioreactor Cultivation of Insect Cells. Schering-Plough Research Institute, New Jersey, 1989-1993
66. Bioprocess Engineering for Heterologous Protein Production by Yeast. National Science Foundation (NSF), 1989 – 1992
67. Enzyme Stabilization for Biosensor Development. Resource Technologies Group, Inc., West Virginia, subcontract of US Air Force, 1989 – 1992
68. Bioreactor Culture of Insect Cells. US Public Health Service, 1987 – 1988
69. Bioreactor Culture of Insect Cells. Rutgers University Research Council, 1987 – 1989
70. Bioprocess Development for Cyclosporin Production. National Science Foundation (NSF) Career Initiation Award, 1987 – 1989
71. Bioprocess Development for Immunosuppressant Elaboration. US Public Health Service, 1986 – 1987
72. Cyclosporin Production by Free and Immobilized Cells. Rutgers University Research Council, 1985 – 1987
73. Gramicidin Synthetase Stabilization. Natural Sciences and Engineering Research Council (NSERC), Canada, 1983 – 1985

PUBLICATIONS

A.        Livres édités

1. S.N. Agathos and B. Stenuit, Volume Editors (2019). Environmental and Related Biotechnologies. Volume 6, Comprehensive Biotechnology, 3rd Edition (M. Moo Young, Editor-in-Chief), Elsevier, Oxford, UK, 655 pp. ISBN:  978-0-444-64046-8.
2. S.N. Agathos, Volume Editor (2011). Environmental Biotechnology and Safety. Volume 6,  Comprehensive Biotechnology, Second Edition (M. Moo Young, Editor-in-Chief), Elsevier, Oxford, UK, 955 pp. ISBN:  978-0-444-53352-4.
3. S.N. Agathos and W. Reineke, Editors (2002). Biotechnology for the Environment: Strategy and Fundamentals. Focus on Biotechnology Series, Volume 3a, Kluwer Academic Publishers, Dordrecht, The Netherlands, 248 pp. ISBN 1-4020-0529-6.
4. S.N. Agathos and W. Reineke, Editors (2002). Biotechnology for the Environment: Soil Remediation. Focus on Biotechnology Series, Volume 3b, Kluwer Academic Publishers, Dordrecht, The Netherlands, 148 pp. ISBN 1-4020-1051-6.
5. S.N. Agathos and W. Reineke, Editors (2003). Biotechnology for the Environment: Wastewater Treatment and Modeling, Waste Gas Handling. Focus on Biotechnology Series, Volume 3c, Kluwer Academic Publishers, Dordrecht, The Netherlands, 288 pp. ISBN 1-4020-1131-8.

B.        Articles dans des révues à comité de lecture (* indique des articles à haut impact dans les révues principales du domaine correspondant)

6. F. Liaqat, M.I. Khazi, A. Bahadar, L. He, A. Aslam, R. Liaquat, S.N. Agathos and J. Li (2022). Mixotrophic cultivation of microalge for carotenoid production. Reviews in Aquaculture, 14 https://doi.org/10.1111/raq.12700
7. Y. Adamian, L. Lonappan, K. Alokpa, S.N. Agathos and H. Cabana (2021). Recent developments in the immobilization of laccase on carbonaceous supports for environmental applications – a critical review. Frontiers in Bioengineering and Biotechnology, 9:778239 https://doi.org/10.3389/fbioe.2021.778239 Published 06 December 2021
8. R.H. Baltz, E.J. Vandamme, J.W. Bennett, S.N. Agathos, S. Sanchez, H. Osada, Z. Deng and R. Gonzalez (2021). Introduction and commentaries for the special issue: “Arnold L. Demain – A life lived”. Journal of Industrial Microbiology and Biotechnology, 48(9-10) https://doi.org/10.1093/jimb/kuab086 Advance access 01 December 2021
9. E.C. Mollocana-Lara, M. Ni, S.N. Agathos and F.A. Gonzales-Zubiate (2021). The infinite possibilities of RNA therapeutics. Journal of Industrial Microbiology and Biotechnology, 48(9-10) https://doi.org/10.1093/jimb/kuab063 Advance access 31 August 2021
10. F. Augelletti, J. Tremblay, S.N. Agathos, A. Jousset and B. Stenuit (2020). Draft whole-genome sequence of the anthracene-degrading strain Mycolicibacterium frderiksbergense LB501T, isolated from a polycyclic aromatic hydrocarbon-contaminated soil. Microbiology Resource Announcements, 9:e00671-20 https://doi.org/10.1128/MRA.00671-20
11. * X. Li, X. Wang, C. Duan, S. Yi, Z. Gao, C. Xiao, S.N. Agathos, G. Wang and J. Li (2020). Biotechnological production of astaxanthin from the microalga Haematococcus pluvalis. Biotechnology Advances, 43:107602  https://doi.org/10.1016/j.biotechadv.2020.107702
12. F. Augelletti, A. Jousset, S.N. Agathos and B. Stenuit (2020). Diversity manipulation of psychrophilic bacterial consortia for improved biological treatment of medium-strength wastewater. Frontiers in Microbiology, 11:1490  https://doi.org/10.3389/fmicb.2020.01490
13. M.S. Zambrano-Mila, S.N. Agathos and J.K.V. Reichardt (2019). Human genetics and genomics research in Ecuador: historical survey, current state, and future directions. Human Genomics, 13:64  https://doi.org/10.1186/s40246-019-0249-8      
14. J.A. Castillo and S.N. Agathos (2019). A genome-wide scan for genes under balancing selection in the plant pathogen Ralstonia solanacearum. BMC Evolutionary Biology, 19:123  https://doi.org/10.1186/s12862-019-1456-6  
15. S. Sart and S.N. Agathos (2018). Towards three-dimensional dynamic regulation and in situ characterization of single stem cell phenotype using microfluidics. Molecular Biotechnology, 60:843-861 https://doi.org/10.1007/s12033-018-0113-4 
16. F. Augelletti, J. Tremblay, S.N. Agathos and B. Stenuit (2018). Draft whole-genome sequence of the fluorene-degrading Sphingobium sp. Strain LB126, isolated from polycyclic aromatic hydrocarbon-contaminated soil. Genome Announcements, 6:e00249-18  https://doi.org/10.1128/genomeA.00249-18  
17. K. Mitropoulos, D.N. Cooper, C. Mitropoulou, S. Agathos, J.K.V. Reichardt, F. Al-Maskari, W. Chantratita, A. Wonkam, C. Dandara, T. Katsila, C. Lopez-Correa and G.P. Patrinos (2017). Genomic medicine without borders: Which strategies should developing countries employ to invest in precision medicine? A new “fast-second winner” strategy. OMICS, 21(11): 647-657  https://doi.org/10.1089/omi.2017.0141
18. C. Castillo-Chavez, P. Ponce, J. Reichardt, S. Agathos, P. Arellano, A. Griewank, E. Medina, H. Rodriguez and E.J. Patiño (2017). Yachay’s promise. Science, 357(6354): 881
19. S.A. Dahoumane, C. Jeffryes, M. Mechouet and S.N. Agathos (2017). Biosynthesis of inorganic nanoparticles: A fresh look at the control of shape, size and composition. Bioengineering, 4: 14  http://dx.doi.org/10.3390/bioengineering4010014
20. R. Taboada-Puig, M.T. Moreira, S.N. Agathos and J.M. Lema (2017). The impact of endocrine-disrupting chemicals on the environment and their potential biotransformation by white-rot fungi and their oxidative enzymes. Bionatura, 2(1): 263-271 http://dx.doi.org/10.21931/RB/2017.02.01.9
21. * E. Bouhajja, M. McGuire, M.R. Liles, G. Bataille, S.N. Agathos and I.F. George (2017). Identification of novel toluene monooxygenase genes in a hydrocarbon-polluted sediment using sequence- and function-based screening of metagenomic libraries. Applied Microbiology and Biotechnology, 101(2): 797-808.
22. * E. Bouhajja, S.N. Agathos and I.F. George (2016). Metagenomics: Probing pollutant fate in natural and engineered ecosystems. Biotechnology Advances, 34: 1413-1426.    
23. C. De Mulder, S. Van Hoey, S. Van Hulle, S.N. Agathos, P. Cauwenberg, P. Mergen, P. Seuntjens, I. Smets, G. De Gueldre, A. Mouton, D. Schowanek, B. Meesschaert, W. Verstraete and I. Nopens (2016). Pressing topics in the Belgian water sector anno 2015. Sustainability of Water Quality and Ecology, 7: 32-36.
24. S.A. Dahoumane, M. Mechouet, F.J. Alvarez, S.N. Agathos and C. Jeffryes (2016). Microalgae: An outstanding tool in nanotechnology. Bionatura, 1(4): 196-201 http://dx.doi.org/10.21931/RB/2016.01.04.7
25. * J. Nesme, W. Achouak, S.N. Agathos, M. Bailey, P. Baldrian, D. Brunel, A. Frostegard, T. Heulin, J.K. Jansson, E. Jurkevitch, K.L. Kruus, G.A. Kowalchuk, A. Lagares, H.M. Lappin-Scott, P. Lemanceau, D. Le Paslier, I. Mandic-Mulec, J.C. Murrell, D.D. Myrold, R. Nalin, P. Nannipieri, J.D. Neufeld, F. O’Gara, J.J. Parnell, A. Pühler, V. Pylro, J.L. Ramos, L.F.W. Roesch, M. Schloter, C. Schleper, A. Sczyrba, A. Sessitsch, S. Sjöling, J. Sorensen, S.J. Sorensen, C.C. Tebbe, E. Topp, G. Tsiamis, J.D. van Elsas, G. van Keulen, F. Widmer, M. Wagner, T. Zhang, X. Zhang, L. Zhao, Y.-G. Zhu, T.M. Vogel and P. Simonet (2016). Back to the future of soil metagenomics. Frontiers in Microbiology, 7: 73 http://dx.doi.org/10.33389/fmicb.2016.00073
26. S. Sart and S.N. Agathos (2016). Large-scale expansion and differentiation of mesenchymal stem cells in microcarrier-based stirred bioreactors. Methods in Molecular Biology                    1502: 87-102 (DOI 10.1007/7651_2015_314).
27. E. Bouhajja, T. Efthymiopoulos, I.F. George, D. Moreels, R. Van Houdt, M. Mergeay, and S.N. Agathos (2016). Conjugative transfer of broad host range plasmids to an acidobacterial strain, Edaphobacter aggregans. Journal of Biotechnology, 221: 107-113.
28. * B.S. Grama, S.N. Agathos and C. Jeffryes (2016). Balancing photosynthesis and respiration increases microalgal biomass productivity during photoheterotrophy on glycerol. ACS Sustainable Chemistry & Engineering 4: 1611-1618.
29. F. Spina, C. Junghanns, I. Donelli, R. Nair, P. Demarche, A. Romagnolo, G. Freddi, S.N. Agathos and G.C. Varese (2016). Stimulation of laccases from Trametes pubescens: Use in dye decolorization and cotton bleaching. Preparative Biochemistry & Biotechnology 46(7): 639-647.
30. C. Jeffryes, V. Severi, A. Delhaye, B. Urbain, B. Grama and S.N. Agathos (2016). Energy conversion in an internally illuminated annular-plate airlift photobioreactor. Engineering in Life Sciences, 16: 348-354.
31. * S. Sart, S.N. Agathos, Y. Li and T. Ma (2016). Regulation of mesenchymal stem cell 3D microenvironment: From macro to microfluidic bioreactors. Biotechnology Journal, 11: 43-57.
32. P. Pérez-López, C. Jeffryes, S.N. Agathos, G. Feijoo, G. Rorrer and M.T. Moreira (2016). Environmental life cycle optimization of essential terpene oils produced by the macroalga Ochtodes secundiramea. Science of the Total Environment, 542: 292-305.
33. C. Jeffryes, J. Li and S.N. Agathos (2015). Dimensionless equations to describe microalgal growth in a planar cultivation system. Biotechnology Letters, 37(11): 2167-2171.
34. * I. Ardao, D. Magnin and S.N. Agathos (2015). Bioinspired production of magnetic laccase-biotitania particles for the removal of endocrine disrupting chemicals. Biotechnology & Bioengineering, 112(10): 1986-1996.
35. * R.U. Meckenstock, M. Elsner, C. Griebler, T. Lueders, C. Stumpp, W. Dejonghe, L.L. Bastiaens, D. Springael, E. Smolders, N. Boon, S.N. Agathos, S.R. Sorensen, J. Aamand, H.J. Albrechtsen, P.L. Bjerg, S. Schmidt, W.E. Huang and B.M. Van Breukelen (2015). Biodegradation: Updating the concepts of control for microbial clean-up in contaminated aquifers. Environmental Science & Technology, 49: 7073-7081.
36. P. Demarche, C. Junghanns, I. Ardao and S.N. Agathos (2015). Dynamic measurement of oxidase activity based on oxygen consumption in open systems. Engineering in Life Sciences, 15: 804-814.
37. * B. Stenuit and S.N. Agathos (2015). Deciphering microbial community robustness through synthetic ecology and molecular systems synecology. Current Opinion in Biotechnology, 33: 305-317.
38. * C. Jeffryes, S.N. Agathos and G. Rorrer (2015). Biogenic nanomaterials from photosynthetic microorganisms. Current Opinion in Biotechnology, 33: 23-31.
39. J. Li, M. Stamato, E. Velliou, C. Jeffryes and S.N. Agathos (2015). Design and characterization of a scalable airlift flat panel photobioreactor for microalgae cultivation. Journal of Applied Phycology, 27(1): 75-86.
40. M. Majone, R. Verdini, F. Aulenta, S. Rossetti, V. Tandoi, N. Kalogerakis, S. Agathos, S. Puig, G. Zanaroli and F. Fava (2015). In situ groundwater and sediment bioremediation: barriers and perspectives at European contaminated sites. New Biotechnology 32(1): 133-146.
41. M. Gavrilescu, K. Demnerová, J. Aamand, S. Agathos and F. Fava (2015). Emerging pollutants in the environment: present and future challenges in biomonitoring, ecological risks and bioremediation. New Biotechnology 32(1): 147-156.
42. S. Sart, Y.-J. Schneider, Y. Li and S.N. Agathos (2014). Stem cell bioprocess engineering towards cGMP production and clinical applications. Cytotechnology 66(5): 709-722.
43. * B.S. Grama, S. Chader, D. Khelifi, B. Stenuit, C. Jeffryes and S.N. Agathos (2014). Characterization of fatty acid and carotenoid production in an Acutodesmus microalga isolated from the Algerian Sahara. Biomass and Bioenergy 69: 265-275.
44. L.I. Ramírez-Cavazos, C. Junghanns, N. Ornelas-Soto, D.L. Cárdenas-Chávez, C. Hernández-Luna, P. Demarche, E. Enaud, R. García-Morales, S.N. Agathos and R. Parra (2014). Purification and characterization of two thermostable laccases from Pycnoporus sanguineus and potential role in degradation of endocrine disrupting chemicals. Journal of Molecular Catalysis B: Enzymatic 108: 32-42.
45. L.I. Ramírez-Cavazos, C. Junghanns, R. Nair, D.L. Cárdenas-Chávez, C. Hernández-Luna, S.N. Agathos and R. Parra (2014). Enhanced production of thermostable laccases from a native strain of Pycnoporus sanguineus using central composite design. J. Zheijiang Univ-Sci B (Biomed & Biotechnol) 15(4): 343-352.
46. S. Sart, S.N. Agathos and Y. Li (2014). Process engineering of stem cell metabolism for large scale expansion and differentiation in bioreactors. Biochemical Engineering Journal 84: 74-82.
47. * B.S. Grama, S. Chader, D. Khelifi, S.N. Agathos and C. Jeffryes (2014). Induction of canthaxanthin production in a Dactylococcus microalga isolated from the Algerian Sahara. Bioresource Technology, 151: 297-305.
48. P. Pérez-López, S. González-García, C. Jeffryes, S.N. Agathos, E. McHugh, D. Walsh, P. Murray, S. Moane, G. Feijoo and M.T. Moreira (2014). Life cycle assessment of the production of the red antioxidant carotenoid astaxanthin by microalgae: from lab to pilot scale. Journal of Cleaner Production 64: 332-344.
49. S. Sart, S.N. Agathos and Y. Li (2013). Engineering stem cell fate with biochemical and biomechanical properties of microcarriers. Biotechnology Progress 29: 1354-1366.
50. P.M. Murray, S. Moane, C. Collins, T. Beletskaya, O.P. Thomas, A.W.F. Duarte, F.S. Nobre, I.O. Owoyemi, F.C. Pagnocca, L.D. Sette, E. McHugh, E. Causse, P. Pérez-López, G. Feijoo, M.T. Moreira, J. Rubiolo, M. Leirós, L.M. Botana, S. Pinteus, C. Alves, A. Horta, R. Pedrosa, C. Jeffryes, S.N. Agathos, C. Allewaert, A. Verween, W. Vyverman, I. Laptev, S. Sineoky, A. Bisio, R. Manconi, F. Ledda, M. Marchi, R. Pronzato and D.J. Walsh (2013). Sustainable production of biologically active molecules of marine based origin. New Biotechnology 30: 839-850.
51. R.R. Nair, P. Demarche and S.N. Agathos (2013). Formulation and characterization of an immobilized laccase biocatalyst and its application to eliminate organic micropollutants in wastewater. New Biotechnology 30: 815-823.
52. * S. Sart, A. Errachid, Y.-J. Schneider and S.N.Agathos (2013). Modulation of mesenchymal stem cell actin organization on conventional microcarriers for proliferation and differentiation in stirred bioreactors. Journal of Tissue Engineering and Regenerative Medicine 7: 537-551.
53. C. Arboleda, H. Cabana, E. De Pril, J.P. Jones, G.A. Jimenez, A.I. Mejia, S.N. Agathos and M.J. Penninckx (2013). Elimination of bisphenol A and triclosan using the enzymatic system of autochthonous Colombian forest fungi. ISRN Biotechnology, online journal Article ID 96824, http://dx.doi.org/10.5402/2013/968241
54. * B. Stenuit, G. Lamblin, P. Cornelis and S.N. Agathos (2012). Aerobic denitration of 2,4,6-trinitrotoluene in the presence of phenazine compounds and reduced pyridine nucleotides. Environ. Sci. Technol. 46: 10605-10613.
55. P. Demarche, C. Junghanns, N. Mazy and S.N. Agathos (2012). Design-of-experiment strategy for the formulation of laccase biocatalysts and their application to degrade bisphenol A. New Biotechnology 30: 96-103.
56. * J.-C. Drugmand, Y.-J. Schneider and S.N. Agathos (2012). Insect cells as factories for biomanufacturing. Biotechnology Advances 30: 1140-1157.
57. * P. Demarche, C. Junghanns, R. Nair and S.N. Agathos (2012). Harnessing the power of enzymes for environmental stewardship. Biotechnology Advances 30: 933-953.
58. * I.F. George, M. Hartmann, M.R. Liles and S.N. Agathos (2011). Recovery of as-yet uncultured soil Acidobacteria on dilute soil media. Appl. Environ. Microbiol. 77: 8184-8188.
59. J.-F. Michiels, S. Sart, Y.-J. Schneider and S.N. Agathos (2011). Effects of a soy peptone on gamma-IFN production steps in CH-320 cells. Process Biochemistry 46: 1759-1766.
60. * R. Taboada-Puig, C. Junghanns, P. Demarche, M.T. Moreira, G. Feijoo, J.M. Lema and S.N. Agathos (2011). Combined cross-linked enzyme aggregates from versatile peroxidase and glucose oxidase: Production, partial characterization and application for the elimination of endocrine disruptors. Bioresource Technology 102: 6593-6599.
61. J.-F. Michiels, J. Barbau, S. De Boel, S. Dessy, S.N. Agathos and Y.-J. Schneider (2011). Characterization of beneficial and detrimental effects of a soy peptone as an additive for CHO cell cultivation. Process Biochemistry, 46: 671-681.
62. * B. Stenuit and S.N. Agathos (2010). Microbial 2,4,6-trinitrotoluene degradation: could we learn from (bio)chemistry for bioremediation and vice versa? Appl. Microbiol. Biotechnol. 88: 1043-1064.
63. S. Sart, Y.J. Schneider and S.N. Agathos (2010). Influence of culture parameters on ear mesenchymal stem cells expanded on microcarriers. J. Biotechnol. 150: 149-160.
64. V. Elisashvili, E. Kachlishvili, T. Khardziani and S.N. Agathos (2010). Effect of aromatic compounds on the production of laccase and manganese peroxidase by white-rot basidiomycetes. J. Ind. Microbiol. Biotechnol. 37: 1091-1096.
65. I. George, M.R. Liles, M. Hartmann, W. Ludwig, R.M. Goodman and S.N. Agathos (2009). Changes in soil Acidobacteria communities after 2,4,6-trinitrotoluene contamination. FEMS Microbiol. Lett. 296: 159-166.
66. S. Chader, H. Hachene and S.N. Agathos (2009). Study of hydrogen production by three strains of Chlorella isolated from the soil in the Algerian Sahara. International Journal of Hydrogen Energy 34: 4941-4946.
67. * L. Schuler, Y. Jouanneau, S.M. Ní Chadhain, C. Meyer, M. Pouli, G.J. Zylstra, P. Hols and S.N. Agathos (2009). Characterization of a ring-hydroxylating dioxygenase from phenanthrene-degrading Sphingomonas sp. strain LH128 able to oxidize benz[a]anthracene. Appl. Microbiol. Biotechnol. 83: 465-475.
68. * H. Cabana, C. Alexandre, S.N. Agathos and J. P. Jones (2009). Immobilization of the laccase from the white-rot fungus Coriolopsis polyzona and use of the immobilized biocatalyst for the continuous elimination of endocrine disrupting chemicals.  Bioresource Technology 100: 3447-3458.
69. * H. Cabana, J.P. Jones and S.N. Agathos (2009). Utilization of cross-linked laccase aggregates in a perfusion basket reactor for the continuous elimination of endocrine disrupting chemicals. Biotechnol. Bioeng. 102: 1582-1592.
70. * B. Stenuit, L. Eyers, R. Rozenberg, J.L. Habib Jiwan, S. Matthijs, P. Cornelis and S.N. Agathos (2009). Denitration of 2,4,6-trinitrotoluene in aqueous solutions using small-molecular-weight catalyst(s) secreted by Pseudomonas aeruginosa ESA-5. Environ. Sci. Technol. 43: 2011-2017.
71. S. Sart, Y.J. Schneider and S.N. Agathos (2009). Ear mesenchymal stem cells: An efficient adult multipotent cell population fit for rapid and scalable expansion. J. Biotechnol. 139: 291-299.
72. V. Elisashvili, E. Kachlishvili, N. Tsiklauri, E. Metreveli, T. Khardziani and S.N. Agathos (2009). Lignocellulose-degrading enzyme production by white-rot Basidiomycetes isolated from the forests of Georgia. World J. Microbiol. Biotechnol. 25: 331-339.
73. B. Stenuit and S.N. Agathos (2009). Rapid and unbiased colorimetric quantification of nitrite and ammonium ions released from 2,4,6-trinitrotoluene during biodegradation studies: Eliminating interferences. Int. Biodeter. Biodegr.  63:  116-122.
74. * B. Stenuit, L. Eyers, L. Schuler, S.N. Agathos and I. George (2008). Emerging high-throughput approaches to analyze bioremediation of sites contaminated with hazardous and/or recalcitrant wastes. Biotechnology Advances 26: 561-575.
75. * L. Eyers, B. Stenuit and S.N. Agathos (2008). Denitration of 2,4,6-trinitrotoluene by Pseudomonas aeruginosa ESA-5 in the presence of ferrihydrite. Appl. Microbiol. Biotechnol. 79: 489-497.
76. I. George, L. Eyers, S. El-Fantroussi and S.N. Agathos (2008). Effect of 2,4,6-trinitrotoluene on soil bacterial communities. J. Ind. Microbiol. Biotechnol. 35:  225-236.
77. * L. Schuler, S.M. Ní Chadhain, Y. Jouanneau, C. Meyer, G.J. Zylstra, P. Hols and S.N. Agathos (2008).  Characterization of a novel angular dioxygenase from fluorene-degrading Sphingomonas sp. strain LB126. Appl. Environ. Microbiol. 74: 1050-1057.
78. * S. Vanhulle, M. Trovaslet, E. Enaud, M. Lucas, S. Taghavi, D. Van der Lelie, B. Van Aken, M. Foret, R.C.A. Onderwater, D. Wesenberg, S.N. Agathos, Y.-J. Schneider and A.-M. Corbisier (2008). Decolourisation, cytotoxicity and genotoxicity reduction during a combined ozonation/fungal treatment of dye contaminated wastewater. Environ. Sci. Technol. 42: 584-589.
79. S. Chader, H. Hacene, M. Belhamel and S. Agathos (2007). Etudes des procédés de production biologiques de l’hydrogène. Revue des Energies Renouvelables 10: 497-505.
80. L. Coulibaly and S.N. Agathos (2007). Effects of Aspergillus niger inoculum concentration upon the kinetics of starchy wastewater pretreatment in a tanks-in-series bioreactor under transitory conditions. Brazilian Journal of Chemical Engineering 24: 499-507.
81. H. Cabana, J.P. Jones and S.N. Agathos (2007). Elimination of endocrine disrupting chemicals using white rot fungi and their lignin modifying enzymes: A review. Engineering in Life Sciences 7: 429-456.
82. H. Cabana, J.P. Jones and S.N. Agathos (2007). Preparation and characterization of cross-linked laccase aggregates and their application to the elimination of endocrine disrupting chemicals. J. Biotechnol. 132: 23-31.
83. H. Cabana, J.-L. Habib Jiwan, R. Rozenberg, V. Elisashvili, M. Penninckx, S.N. Agathos and J.P. Jones (2007). Elimination of endocrine disrupting chemicals nonylphenol and bisphenol A and personal care product ingredient triclosan using enzyme preparation from the white rot fungus Coriolopsis polyzona. Chemosphere 67: 770-778.
84. * B. Stenuit, L. Eyers, R. Rozenberg, J.-L. Habib-Jiwan and S.N. Agathos (2006). Aerobic growth of Escherichia coli on 2,4,6-trinitrotoluene (TNT) as sole nitrogen source and evidence of TNT denitration by whole cells and cell-free extracts. Appl. Environ. Microbiol. 72: 7945-7948.
85. A. Provost, G. Bastin, S.N. Agathos, Y.-J. Schneider (2006). Metabolic design of macroscopic bioreaction models: application to Chinese hamster ovary cells. Bioprocess Biosyst. Eng. 29: 349-366.
86. * L. Eyers, J.C. Smoot, L.M. Smoot, C. Bugli, H. Urakawa, Z. McMurry, S. Siripong, S. El Fantroussi, P. Lambert, S.N. Agathos and D.A. Stahl (2006). Discrimination of shifts in a soil microbial community associated with TNT-contamination using functional ANOVA of 16S rRNA hybridized to oligonucleotide microarrays. Environ. Sci. Technol. 40: 5867-5873.
87. L. Coulibaly and S.N. Agathos (2006). Influence of Aspergillus niger inoculum size upon the kinetics of macromolecule degradation under transient operating conditions. Eur. J. Sci. Res. 15: 38-51.
88. H. Ali-Khodja, H. Naveau and S.N. Agathos (2005). The removal of methyl ethyl ketone in an essentially gaseous-phase biofilm bioreactor: aspects of dynamic behaviour and the influence of operating characteristics. Fresenius Environ. Bull. 14: 709-715.
89. * J. Dries, L. Bastiaens, D. Springael, S.N. Agathos and L. Diels (2005). Combined removal of chlorinated ethenes and heavy metals by zerovalent iron in batch and continuous flow column systems. Environ. Sci. Technol. 39: 8460-8465.
90. * J. Dries, L. Bastiaens, D. Springael, S. Kuypers, S.N. Agathos and L. Diels (2005). Effect of humic acids on heavy metal removal by zero-valent iron in batch and continuous flow columns. Water Research 39: 3531-3540.
91. B. Stenuit, L. Eyers, S. El Fantroussi and S.N. Agathos (2005). Promising strategies for the mineralization of 2,4,6-trinitrotoluene. Rev. Environ. Sci. Biotechnol. 4: 39-60.
92. J. Mols, C. Peeters-Joris, R. Wattiez, S.N. Agathos and Y.-J. Schneider (2005). Recombinant interferon-gamma secreted by CHO-320 cells cultivated in protein-free media is protected against extracellular proteolysis by the expression of natural protease inhibitors and by the addition of plant protein hydrolysates to the culture medium. In Vitro Cell. Develop. Biol. - Animal 41: 83-91.
93. * S. El Fantroussi and S.N. Agathos (2005). Is bioaugmentation a feasible strategy for pollutant removal and site remediation?  Curr. Opin. Microbiol.  8: 268-275.
94. J.S. Ballez, J. Mols, C.C. Burteau, S.N. Agathos and Y.J. Schneider (2004). Plant protein hydrolysates support CHO-320 cells proliferation and recombinant interferon-gamma production in suspension and inside microcarriers in protein-free media. Cytotechnology 44: 103-114.
95. * L. Eyers, I. George, L. Schuler, B. Stenuit, S.N. Agathos and S. El Fantroussi (2004).  Environmental genomics: exploring the unmined richness of microbes to degrade xenobiotics. Appl. Microbiol. Biotechnol. 66: 123-130.
96. L. Ikonomou, G. Bastin, Y.-J. Schneider and S.N. Agathos (2004). Effect of partial medium replacement on cell growth and protein production in the insect cell-baculovirus system. Cytotechnology 44: 67-76.
97. J. Mols, C. Peeters-Joris, S.N. Agathos and Y.-J. Schneider (2004). Origin of rice protein hydrolysates added to protein-free media alters secretion and extracellular proteolysis of recombinant interferon-gamma as well as CHO-320 cell growth. Biotechnol. Lett. 26: 1043-1046.
98. * J. Dries, L. Bastiaens, D. Springael, S.N. Agathos and L. Diels (2004).  Competition for sorption and degradation of chlorinated ethenes in batch zero-valent iron systems. Environ. Sci. Technol. 38: 2879-2884.
99. V. Beschkov, S. Velizarov, S.N. Agathos and V. Lukova (2004). Bacterial denitrification of waste water stimulated by constant electric field. Biochemical Engineering Journal 17: 141-145.
100. L. Coulibaly G. Gourene and S.N. Agathos (2003). Utilization of fungi for biotreatment of raw wastewater. Afr. J. Biotechnol. 2: 620-630.
101. C.C. Burteau, F.R. Verhoeye, J.F. Mols, J.S. Ballez, S.N. Agathos and Y.J. Schneider (2003). Fortification of a protein-free cell culture medium with plant peptones improves cultivation and productivity of an interferon-gamma producing CHO cell line. In Vitro Cell. Develop. Biol. - Animal 39: 291-296.
102. * I. Sokolovska, R. Rozenberg, C. Riez, P.G. Rouxhet, S.N. Agathos and P. Wattiau (2003). Carbon source-induced modifications in the mycolic acid content and cell wall permeability of Rhodococcus erythropolis E1.  Appl. Environ. Microbiol., 69: 7019-7027.
103. L. Coulibaly and S.N. Agathos (2003). Transformation kinetics of mixed polymeric substrates under transitory conditions by Aspergillus niger. Afr. J. Biotechnol. 2: 438-443.
104. * D. Wesenberg, I. Kyriakides and S.N. Agathos (2003). White-rot fungi and their enzymes for the treatment of industrial dye effluents. Biotechnol. Adv.  22:  161-187.
105. * L. Ikonomou, Y.-J. Schneider and S. N. Agathos (2003). Insect cell culture for industrial production of recombinant proteins. Appl. Microbiol. Biotechnol. 62: 1-20.
106. S.J. Goux, N. Shapir, S. El Fantroussi, S. Lelong, S.N. Agathos and L. Pussemier (2003). Long-term maintenance of rapid atrazine degradation in soils inoculated with atrazine degraders. Water, Air & Soil Pollution: Focus 3: 131-142.
107. L. Ikonomou, J.-C. Drugmand, G. Bastin, Y.-J. Schneider and S. N. Agathos (2002). Microcarrier Culture of Lepidopteran Cell Lines: Implications for Growth and Recombinant Protein Production. Biotechnol. Progress 18:  1345-1355.
108. * P. Wattiau, D. Springael, S.N. Agathos and S. Wuertz (2002). Use of the pAL5000 Replicon in PAH-Degrading Mycobacteria: Application for Strain Labelling and Promoter Probing. Appl. Microbiol. Biotechnol. 59: 700-705.
109. * L. Coulibaly, H. Naveau and S.N. Agathos (2002). A tanks-in-series bioreactor to simulate macromolecular-laden wastewater pretreatment under sewer conditions by Aspergillus niger. Water Research 36: 3941-3948.
110. * O. Drzyzga, R. El Mamouni, S.N. Agathos and J.C. Gottschal (2002). Dehalogenation of Chlorinated Ethenes and Immobilization of Nickel in Anaerobic Sediment Columns under Sulfidogenic Conditions.  Environ. Sci. Technol. 36: 2630-2635.
111. R. El Mamouni, R. Jacquet, P. Gerin and S.N. Agathos (2002). Influence of Electron Donors and Acceptors on the Bioremediation of Soil Contaminated with Trichloroethene and Nickel: Laboratory and Pilot-Scale Study. Water Sci. Technol. 45: 49-54.
112. D. Wesenberg, F. Buchon and S.N. Agathos (2002). Degradation of Dye-Containing Textile Effluent by the Agaric White-Rot Fungal Strain Clitocybula dusenii. Biotechnology Letters 24: 989-993.
113. L. Ikonomou, C. Peeters-Joris, Y.-J. Schneider and S. N. Agathos (2002). Supernatant Proteolytic Activities of High-Five Insect Cells Grown in Serum-Free Culture. Biotechnology Letters 24: 965-969.
114. I. Sokolovska, P. Wattiau, P. Gerin and S.N. Agathos (2002).   Biodegradation of Fluorene at Low Temperature by a Psychrotrophic Sphingomonas sp. Chemical Papers 56: 36-40.
115. * B. Van Aken and S.N. Agathos (2002). Implication of Manganese (III), Oxalate, and Oxygen in the Degradation of Nitroaromatic Compounds by Manganese Peroxidase (MnP). Appl. Microbiol. Biotechnol. 58: 345-351.
116. G.-T. Chun and S.N. Agathos (2001). Application of Oxygen Uptake Rate Measured by a Dynamic Method for Analysis of Related Fermentation Parameters in Cyclosporin A Fermentation: Suspended and Immobilized Cell Cultures. J. Microbiol. Biotechnol. 11: 1055-1060.
117. L. Ikonomou, G. Bastin, Y.-J. Schneider and S.N. Agathos (2001). Design of an Efficient Medium for Insect Cell Growth and Recombinant Protein Production. In Vitro Cell. Develop. Biol. - Animal 37: 549-559.
118. * C. M. Peres, R. Russ, H. Lenke and S. N. Agathos (2001). Biodegradation of 4-nitrobenzoate, 4-aminobenzoate and their mixtures: new strains, unusual metabolites and insights into pathway regulation. FEMS Microbiol. Ecol. 37: 151-159.
119. B. Van Aken and S.N. Agathos (2001). Biodegradation of nitro-substituted explosives by ligninolytic white-rot fungi: A mechanistic approach. Adv. Appl. Microbiol. 48: 1-77.
120. * R. Borraccino, M. Kharoune, R. Giot, S.N. Agathos, E.-J. Nyns, H.P. Naveau and A. Pauss (2001). Abiotic transformation of catechol and 1-naphthol in aqueous solution - Influence of environmental factors. Water Research 35: 3729-3737.
121. * P. Wattiau, M.-E. Renard, P. Ledent, V. Debois, G. Blackman and S.N. Agathos (2001). A PCR Test to Identify Bacillus subtilis and Closely Related Species and Its Application to the Monitoring of Wastewater Biotreatment. Appl. Microbiol. Biotechnol. 56: 816-819.
122. * B. Van Aken, M.D. Cameron, J.D. Stahl, A. Plumat, H. Naveau, S.D. Aust and S.N. Agathos (2000). Glutathione-Mediated Mineralization of ¹⁴C-Labeled 2-Amino-4,6-Dinitrotoluene by Manganese-Dependent Peroxidase H5 from the White-Rot Fungus Phanerochaete chrysosporium. Appl. Microbiol. Biotechnol. 54: 659-664.
123. * S.J. Goux, M. Ibanez, M. Van Hoorick, P. Debongnie, S.N. Agathos and L. Pussemier (2000). Biodegradation of Atrazine in Sand Sediments and in a Sand-Filter. Appl. Microbiol. Biotechnol. 54: 589-596.
124. T. Patarinska, D. Dochain, S.N. Agathos and L. Ganovski (2000). Modelling of Continuous Microbial Cultivation Taking into Account the Memory Effects. Bioprocess Engineering 22: 517-527.
125. B. Van Aken, J.D. Stahl, H. Naveau, S.N. Agathos and S.D. Aust (2000). Transformation of 2,4,6-Trinitrotoluene (TNT) Reduction Products by Lignin Peroxidase (H8) from the White-Rot Basidiomycete Phanerochaete chrysosporium. Bioremediation Journal 4: 135-145.
126. C.M. Peres and S.N. Agathos (2000). Biodegradation of Nitroaromatic Pollutants: from Pathways to Remediation. Biotechnology Annual Review 6: 197-220.
127. * V. Acha, M. Meurens, H. Naveau and S.N. Agathos (2000). ATR-FTIR Sensor Development for Continuous On-line Monitoring of Chlorinated Aliphatic Hydrocarbons in a Fixed-Bed Bioreactor. Biotechnol. Bioeng. 68: 473-487.
128. B. Van Aken, P. Ledent, H. Naveau and S.N. Agathos (2000). Co-immobilization of Manganese Peroxidase from Phlebia radiata and Glucose Oxidase from Aspergillus niger on Porous Silica Beads. Biotechnology Letters 22: 641-646.
129. M.R. Kosseva, V.N. Beschkov, C. Peres and S.N. Agathos (1999) Removal of 2,4-Dinitrophenol by Simultaneous Adsorption and Bacteria Pseudomonas putida Fixed on Solid Supports. Bulg. Chem. Comm. 31: 45-50.
130. V. Acha, M. Meurens, H. Naveau and S.N. Agathos (1999). Detoxification of a Mixture of Aliphatic Chlorinated Hydrocarbons in a Fixed-Bed Bioreactor: Continuous On-Line Monitoring via an ATR-FTIR (Attenuated Total Reflection-Fourier Transform Infrared) Sensor. Water Sci. Technol. 40: 41-47.
131. V. Acha, M. Meurens, H. Naveau, D. Dochain, G. Bastin and S.N. Agathos (1999). Model-Based Estimation of an Anaerobic Reductive Dechlorination Process via an ATR-FTIR (Attenuated Total Reflection-Fourier Transform Infrared) Sensor. Water Sci. Technol. 40: 33-40.
132. * C.M. Peres, B. Van Aken, H. Naveau and S.N. Agathos (1999). Continuous Degradation of Mixtures of 4-Nitrobenzoate and 4-Aminobenzoate by Immobilized Cells of Burkholderia cepacia strain PB4. Appl. Microbiol. Biotechnol. 52: 440-445.
133. * S. El Fantroussi, M. Belkacemi, E.M. Top, J. Mahillon, H. Naveau and S.N. Agathos (1999). Bioaugmentation of a Soil Bioreactor Designed for Pilot Scale Anaerobic Bioremediation Studies. Environ. Sci. Technol. 33: 2992-3001.
134. B. Van Aken, M. Hofrichter, K. Scheibner, A.I. Hatakka, H. Naveau and S.N. Agathos (1999). Transformation and Mineralization of 2,4,6-Trinitrotoluene (TNT) by Manganese Peroxidase from the White-Rot Basidiomycete Phlebia radiata. Biodegradation 10: 83-91.
135. * P. Ledent, H. Michels, G. Blackman, H. Naveau and S.N. Agathos (1999). Reversal of the Inhibitory Effect of Surfactants upon Germination and Growth of a Consortium of Different Strains of Bacillus. Appl. Microbiol. Biotechnol. 51: 370-374.
136. B. Van Aken, L. Godefroid, C. Peres, H. Naveau and S.N. Agathos (1999). Mineralization of ¹⁴C-U-Ring Labeled 4-Hydroxylamino-2,6-Dinitrotoluene by Manganese-Dependent Peroxidase of the White-Rot Basidiomycete Phlebia radiata. J. Biotechnol. 68: 159-169.
137. S. Goux, S.N. Agathos and L. Pussemier (1998). Metabolic Characterization of Fifteen Atrazine Degrading Microbial Communities. J. Ind. Microbiol. Biotechnol. 21: 254-259.
138. S. El Fantroussi, E. Ntibahezwa, S. Thomas, H. Naveau and S.N. Agathos (1998). Effects of Specific Inhibitors on the Anaerobic Reductive Dechlorination of 2,4,6-Trichlorophenol by a Stable Methanogenic Consortium. Anaerobe 4: 197-203.
139. * C.M. Peres, H. Naveau and S.N. Agathos (1998). Biodegradation of Nitrobenzene by Simultaneous Reduction of Nitrobenzene into Aniline and Mineralization of the Aniline Formed. Appl. Microbiol. Biotechnol. 49: 343-349.
140. S. El Fantroussi, H. Naveau and S.N. Agathos (1998). Anaerobic Dechlorinating Bacteria. Biotechnology Progress 14: 167-188.
141. S. El Fantroussi, R. Giot, H. Naveau and S.N. Agathos (1998). Acclimation of a Methanogenic Consortium to a Mixture of Hydroxylated Aromatic Compounds. Chemosphere 36: 1575-1583.
142. S.N. Agathos, E. Hellin, H. Ali-Khodja, S. Deseveaux, F. Vandermesse and H. Naveau (1997). Gas-Phase Methyl Ethyl Ketone Biodegradation in a Tubular Biofilm Reactor: Microbiological and Bioprocess Aspects. Biodegradation 8: 251-264.
143. D. Dochain, S.N. Agathos and P. Vanrolleghem (1997). Asymptotic Observers as a Tool for Modelling Process Dynamics. Water Sci. Technol. 36: 259-268.
144. S. El Fantroussi, J. Mahillon, H. Naveau and S.N. Agathos (1997). Introduction and PCR Detection of Desulfomonile tiedjei in Soil Slurry Microcosms. Biodegradation 8: 125-133.
145. B. Van Aken, K. Skubisz, H. Naveau and S.N. Agathos (1997). Biodegradation of 2,4,6-Trinitrotoluene (TNT) by the White-Rot Basidiomycete Phlebia radiata. Biotechnology Letters 19: 813-817.
146. * S. El Fantroussi, J. Mahillon, H. Naveau and S.N. Agathos (1997). Introduction of Anaerobic Dechlorinating Bacteria in Soil Slurry Microcosms and Nested PCR Monitoring. Appl. Environ. Microbiol. 63: 806-811.
147. S.N. Agathos (1996). Insect Cell Bioreactors. Cytotechnology 20: 173-189.
148. * J.-B. Boucquey, P. Renard, P. Amerlynck, P. Modesto Filho, S.N. Agathos, H. Naveau and E.-J. Nyns (1995). High-Rate Continuous Biodegradation of Concentrated Chlorinated Aliphatics by a Durable Enrichment of Methanogenic Origin under Carrier-Dependent Conditions. Biotechnol. Bioeng. 47: 298-307.
149. W.T. Hensler and S.N. Agathos (1994). Evaluation of Monitoring Approaches and Effects of Culture Conditions on Recombinant Protein Production in Baculovirus-Infected Insect Cells. Cytotechnology 15: 177-186.
150. W. Hensler, V. Singh and S.N. Agathos (1994). Sf9 Insect Cell Growth and β-Galactosidase Production in Serum and Serum Free Media. Ann. N.Y. Acad. Sci. 745: 149-166.
151. * A. Nathan, S. Zalipsky, S.I. Ertel, S.N. Agathos, M.L. Yarmush and J. Kohn (1993). Copolymers of Lysine and Polyethylene Glycol: A New Family of Functionalized Drug-Carriers. Bioconjugate Chemistry 4: 54-62.
152. G-T. Chun and S.N. Agathos (1993). Dynamic Response of Immobilized Cells to Pulse Addition of L-valine in Cyclosporin A Biosynthesis. J. Biotechnol. 27: 283-294.
153. S.N. Agathos and J. Lee (1993). Mathematical Modeling of the Fungal Production of Cyclosporin A: Effect of L-valine. Biotechnology Progress 9: 54-63.
154. * S.N. Agathos (1991). Production Scale Insect Cell Culture. Biotechnology Advances 9: 51-68.
155. * J. Lee and S.N. Agathos (1991). Dynamics of L-valine in Relation to the Production of Cyclosporin A by Tolypocladium inflatum. Appl. Microbiol. Biotechnol. 34: 513-517.
156. * G-T. Chun and S.N. Agathos (1991). Comparative Studies of Physiological and Environmental Effects on the Production of Cyclosporin A in Suspended and Immobilized Cells of Tolypocladium inflatum. Biotechnol. Bioeng. 37: 256-265.
157. * T.H. Aarnio and S.N. Agathos (1990). Pigmented Variants of Tolypocladium inflatum in Relation to Cyclosporin Production. Appl. Microbiol. Biotechnol. 33: 435-437.
158. S.N. Agathos, Y-H. Jeong and K. Venkat (1990). Growth Kinetics of Free and Immobilized Insect Cell Cultures. Ann. N.Y. Acad. Sci. 589: 372-398.
159. S.N. Agathos and R. Parekh (1990). Enhancement of Cyclosporin Production in a Tolypocladium inflatum Strain after Epichlorohydrin Treatment. J. Biotechnol. 13: 73-81.
160. T.H. Aarnio and S.N. Agathos (1989). Production of Extracellular Enzymes and Cyclosporin by Tolypocladium inflatum and Morphologically Related Fungi. Biotechnology Letters 11: 759-764.
161. * J. Tasker and S.N. Agathos (1989). Dependence of In Vivo Inactivation Kinetics of Gramicidin S Synthetase on Cell Physiology. Biotechnol. Bioeng. 34:1037-1044.
162. G-T. Chun and S.N. Agathos (1989). Immobilization of Tolypocladium inflatum Spores into Porous Celite Beads for Cyclosporine Production. J. Biotechnol. 9: 237-254.
163. J. Lee and S.N. Agathos (1989). Effect of Amino Acids on the Production of Cyclosporin A by Tolypocladium inflatum. Biotechnol. Lett. 11: 77-82.
164. S.N. Agathos, C. Madhosingh, J.W. Marshall and J. Lee (1987). The Fungal Production of Cyclosporine. Ann. N.Y. Acad. Sci. 506: 657-662.
165. S.N. Agathos, J.W. Marshall, C. Moraiti, R. Parekh and C. Madhosingh (1986). Physiological and Genetic Factors for Process Development of Cyclosporine Fermentations. J. Ind. Microbiol. 1: 39-48.
166. * S.N. Agathos and A.L. Demain (1986). Dissolved oxygen levels and the in vivo stability of gramicidin S synthetase. Appl. Microbiol. Biotechnol. 24: 319-322.
167. S.N. Agathos and A.L. Demain (1986). Substrate Amino Acid-Mediated Stabilization of Gramicidin S Synthetase against Inactivation In Vivo. Enzyme Microb. Technol. 8: 465-468.
168. A.L. Demain and S.N. Agathos (1986). Studies on In Vivo Inactivation of Gramicidin S Synthetase and its Retardation. Can. J. Microbiol. 32: 208-214.
169. S.N. Agathos and A.L. Demain (1984). Gramicidin S Synthetase Stabilization In Vivo. Ann. N.Y. Acad. Sci. 434: 44-47.
170. S.N. Agathos and A.L. Demain (1983). Optimization of Fermentation Processes through the Control of In Vivo Inactivation of Microbial Biosynthetic Enzymes. ACS Symp. Ser. 207 (Foundations of Biochemical Engineering): 53-67.
171. A.L. Demain, A. Poirier, S. Agathos and O. Nimi (1981). Appearance and Disappearance of Gramicidin S Synthetases. Devel. Ind. Microbiol. 22: 233-244.
172. S.N. Agathos, A.L. Griffith, R. Uauy-Dagach, V.R. Young and N. Catsimpoolas (1977). Transient Velocity Sedimentation at Unit Gravity of Human Erythrocytes. Analytical Biochemistry 81: 143-150.

C.              Chapitres de livres

169. S.N. Agathos and B. Stenuit (2019). Introduction to Environmental and Related Biotechnologies. In: M. Moo Young, Editor, Comprehensive Biotechnology, 3rd Edition, Volume 6 - Environmental and Related Biotechnologies, pp. 1-3. Elsevier, Oxford, UK. ISBN: 978-0-444-64046-8.00334-7.
170. F. Augelletti, B. Stenuit, S.N. Agathos and A. Jousset (2019). Manipulation of biodiversity to steer and optimize microbial community function. In: M. Moo Young, Editor, Comprehensive Biotechnology, 3rd Edition, Volume 6 - Environmental and Related Biotechnologies, pp. 29-41. Elsevier, Oxford, UK. ISBN: 978-0-444-64046-8.00478-X.
171. I.F. George, E. Bouhajja and S.N. Agathos (2019). Metagenomics for bioremediation. In: M. Moo Young, Editor, Comprehensive Biotechnology, 3^rd Edition, Volume 6 – Environmental and Related Biotechnologies, pp. 132- 142. Elsevier, Oxford, UK. ISBN: 978-0444-64046-8.00339-6.
172. B.A. Stenuit and S.N. Agathos (2019). Biodegradation and bioremediation of TNT and other nitro explosives. In: M. Moo Young, Editor, Comprehensive Biotechnology, 3rd Edition, Volume 6 - Environmental and Related Biotechnologies, pp. 181-196. Elsevier, Oxford, UK, ISBN:  978-0-444-64046-8.00348-7.
173. G. Matos, A. Oliveira, D. Coutinho, T. Oliva, C. Junior, B. Stenuit, S.N. Agathos, M. Lutterbach and E. Sérvulo (2019). Culturable microbiome and biodegradation activity of diesel B5 and biodiesel (B100) in a contaminated soil bioremediation study. In: T. Lund Skovhus and C. Whitby, Editors, Oilfield Microbiology, Chapter 11, pp. 175-195. CRC Press – Taylor & Francis Group, Boca Raton, FL. ISBN: 978-1-1380-5775-3.
174. B.S. Grama, A. Delhaye, S.N. Agathos and C. Jeffryes (2016). Beta-carotene and other carotenoids and pigments from micro-algae. In: E.J. Vandamme and J.L. Revuelta, Editors, Industrial Biotechnology of Vitamins, Biopigments, and Antioxidants, Chapter 10, pp. 265-286. Wiley – VCH Verlag GmbH & Co, Weinheim, Germany. ISBN: 978-3-527-33734-7.  
175. S. Sart and S.N. Agathos (2016). Large-scale expansion and differentiation of mesenchymal stem cells in microcarrier-based stirred bioreactors. In: K. Turksen, Editor, Bioreactors in Stem Cell Biology, pp. 87-102 (Chapter 6), Springer Protocols in Molecular & Cell Biology, Humana Press, New York. ISBN: 978-1-4939-6476-5 (hardback); 978-1-4939-6478-9 (eBook).
176. I. Ardao, S.N. Agathos, E. Ammann, F. Aulenta, P. Corvini, D. Frascari, M. Majone, R. Hochstrat, U. Hofmann, B. Kolvenbach, D. Schlosser and G. Zanaroli (2015). Immobilization techniques for biocatalysts. In: R. Hochstrat, T. Wintgens and P. Corvini, Editors, Immobilised Biocatalysts for Bioremediation of Groundwater and Wastewater, pp. 49-69. (Ch. 3). International Water Association IWA Publishing, London, UK. ISBN: 978-1-78-040645-9 (Paperback); 978-1-78-040646-6 (eBook).
177. L. Yu, I. Ardao, Y. Ma, P. Corvini and S.N. Agathos (2015). Enzyme reactors. In: R. Hochstrat, T. Wintgens and P. Corvini, Editors, Immobilised Biocatalysts for Bioremediation of Groundwater and Wastewater, pp. 79-96. (Ch. 5). International Water Association IWA Publishing, London, UK. ISBN: 978-1-78-040645-9 (Paperback); 978-1-78-040646-6 (eBook).
178. B. Stenuit and S.N. Agathos (2013). Biodegradation and bioremediation of TNT and other nitro explosives. In: S.A. Elias, Editor, Reference Module in Earth Systems and Environmental Sciences, Elsevier, Amsterdam, Netherlands. ISBN: 978-0-12-409548-9.
179. I.F. George, E. Bouhajja and S.N. Agathos (2011). Metagenomics for bioremediation. In: M. Moo Young, Editor, Comprehensive Biotechnology, Second Edition, Volume 6 - Environmental Biotechnology and Safety, pp. 47-57. Elsevier, Oxford, UK, ISBN:  978-0-444-53352-4.
180. B.A. Stenuit and S.N. Agathos (2011). Biodegradation and bioremediation of TNT and other nitro explosives. In: M. Moo Young, Editor, Comprehensive Biotechnology, Second Edition, Volume 6 - Environmental Biotechnology and Safety, pp. 167-181. Elsevier, Oxford, UK, ISBN:  978-0-444-53352-4.
181. S.N. Agathos (2011). Introduction to Environmental Biotechnology and Safety. In: M. Moo Young, Editor, Comprehensive Biotechnology, Second Edition, Volume 6 - Environmental Biotechnology and Safety, pp. 1-2. Elsevier, Oxford, UK, ISBN:  978-0-444-53352-4.
182. M. Pouli and S.N. Agathos (2011). Bioremediation of PAH-contaminated sites: From pathways to bioreactors. In: A.I. Koukkou, Editor, Microbial Bioremediation of Non-metals, pp. 119-147. Caister Academic Press, Norfolk, UK, ISBN: 978-1-904455-83-7.
183. S.N. Agathos (2010). Insect cell culture. In: R.H. Baltz, J.E. Davies and A.L. Demain, Editors, Manual of Industrial Microbiology and Biotechnology, 3^rd Edition, pp. 212-222. American Society for Microbiology (ASM) Press, Washington, DC, ISBN: 978-1-55581-512-7.
184. I. George, B. Stenuit and S.N. Agathos (2010). Application of metagenomics to bioremediation. In: D. Marco, Editor, Metagenomics: Theory, Methods and Applications, pp. 119-140. Caister Academic Press, Norfolk, UK, ISBN: 978-1-904455-54-7.
185. B. Stenuit, L. Eyers, L. Schuler, I. George and S.N. Agathos (2009). Molecular tools for monitoring and validating bioremediation. In: A. Singh, R.C. Kuhad and O.P. Ward, Editors, Advances in Applied Bioremediation, Soil Biology Series Volume 17, pp. 339-353. Springer Verlag, Heidelberg, ISBN: 978-3-540-89620-3.
186. B. Stenuit, L. Eyers, S.N. Agathos, I. George (2008). High-throughput approaches to analyse waste biotreatment in confined environments. In: Microbial Biodegradation: Genomics and Molecular Biology, E. Diaz (ed.), pp. 319-358. Caister Academic Press, Norwich, UK. ISBN: 978-1-904455-17-2.
187. Agathos, S. N. (2007). Development of serum-free media for lepidopteran insect cell lines.  In:  D. W. Murhammer, Editor, Baculovirus Expression Protocols, second edition, Methods in Molecular Biology Series, Volume 388, pp. 155-185. Humana Press, Totowa, New Jersey. ISBN 978-1-58829-537-8.
188. J.-C. Drugmand, J.-F. Michiels, S. Agathos and Y.-J. Schneider (2007). Growth of mammalian and lepidopteran cells on BioNOC II disks, a novel macroporous microcarrier. In: R. Smith, Editor, Cell Technology for Cell Products, pp. 781-784, Springer, Dordrecht. ISBN 978-1-4020-5475-4.
189. J.-C. Drugmand, Y.-J. Schneider and S. Agathos (2007). Analysis and modeling of the metabolism of lepidopteran cells. In: R. Smith, Editor, Cell Technology for Cell Products, pp. 777-780, Springer, Dordrecht. ISBN 978-1-4020-5475-4.
190. J. Mols, N. Cavez, S. Agathos and Y.-J. Schneider (2007). Plant peptones: Nutritional properties sustaining recombinant protein secretion by CHO cells.  In: R. Smith, Editor, Cell Technology for Cell Products, pp. 599-601, Springer, Dordrecht. ISBN 978-1-4020-5475-4.
191. F. Fava and S.N. Agathos (2006).  Uncertainty and research needs in the area of biological restoration of contaminated sediments. In: D. Reible and T. Lanczos, Editors, Assessment and Remediation of Contaminated Sediments, pp. 239-246, NATO Science Series, IV. Earth and Environmental Sciences – Vol. 73, Springer, Dordrecht, The Netherlands. ISBN-10 1-4020-4958-7.
192. S. El Fantroussi, S.N. Agathos, D.H. Pieper, R. Witzig, B. Camara, L. Gabriel-Jürgens; H. Junca, G. Zanaroli, F. Fava, J.R. Perez-Jimenez, L.Y. Young, K. Hamonts, R. Lookman, M. Maesen, L. Diels, W. Dejonghe, J. Dijk and D. Springael (2006). Biological assessment and remediation of contaminated sediments. In: D. Reible and T. Lanczos, Editors, Assessment and Remediation of Contaminated Sediments, pp. 179-238, NATO Science Series, IV. Earth and Environmental Sciences – Vol. 73, Springer, Dordrecht, The Netherlands. ISBN-10 1-4020-4958-7.
193. S.N. Agathos (2006). Chlorinated solvents biodegradation and nickel bioimmobilization in historically contaminated anaerobic sediments. In: P. Canepa and F. Fava, Editors, Biomonitoring, Bioavailability and Microbial Transformation of Pollutants in Sediments and Approaches to Stimulate their Biodegradation, pp. 33-44, Soil Remediation Series N° 7, INCA, Venice, Italy. ISBN 88-88214-32-1.
194. S.N. Agathos (2005). Bioaugmentation as a strategy for in situ bioremediation. In: F. Fava and P. Canepa, Editors, Innovative Approaches to the Bioremediation of Contaminated Sites, pp. 291-300, INCA, Venice, Italy. ISBN 88-88214-33-X.
195. J. Mols, F. Verhoeye, C. Peeters-Joris, S.N. Agathos and Y.J. Schneider (2005). Extracellular metallopreoteases and their inhibitors expressed by the IFN-gamma producing CHO-320 cell line. In: F. Gòdia and M. Fussenegger, Editors, Animal Cell Technology Meets Genomics, pp. 175-177, Springer, Dordrecht. ISBN 1-4020-2791-5.
196. J.C. Drugmand, Y.J. Schneider and S.N. Agathos (2005). Environmental effects of lactate on High-Five^TM insect cell metabolism. In: F. Gòdia and M. Fussenegger, Editors, Animal Cell Technology Meets Genomics, pp. 91-94, Springer, Dordrecht. ISBN 1-4020-2791-5.
197. L. Eyers, S.N. Agathos and S. El Fantroussi (2004).  Denaturing gradient gel electrophoresis (DGGE) as a fingerprinting tool for analyzing microbial communities in contaminated environments.  In: J.F.T. Spencer and A.L. Ragout de Spencer, Editors, Environmental Microbiology: Methods and Protocols. Methods in Biotechnology Series, Volume 16, pp. 407-417, Humana Press, Totowa, New Jersey. ISBN 1-58829-116-2.
198. S.N. Agathos and W. Reineke (2003). Preface. In: S.N. Agathos and W. Reineke, Editors, Biotechnology for the Environment: Wastewater Treatment and Modeling, Waste Gas Handling. Focus on Biotechnology Series, Volume 3c, pp. 1-2, Kluwer Academic Publishers, Dordrecht, The Netherlands, 288 pp. ISBN 1-4020-1131-8.
199. J. Dries, L. Bastiaens, D. Springael, S.N. Agathos and L. Diels (2002). Combined removal of chlorinated ethenes and heavy metals in zero valent iron systems. In: S.F. Thornton & S.E. Oswald, Editors, Groundwater Quality: Natural and Enhanced Restoration of Groundwater Pollution, IAHS Publication no. 275, pp. 447-452. IAHS Press, Wallingford, Oxforshire, UK. ISBN 1-901502-86-4.
200. J. Dries, L. Bastiaens, D. Springael D, S.N. Agathos and L. Diels (2002). Kinetics of trichloroethene (TCE) reduction by zero valent iron: effect of medium composition. In: S.F. Thornton & S.E. Oswald, Editors, Groundwater Quality: Natural and Enhanced Restoration of Groundwater Pollution, IAHS Publication no. 275, pp. 397-402. IAHS Press, Wallingford, Oxforshire, UK. ISBN 1-901502-86-4.
201. S.N. Agathos and W. Reineke (2002). Preface. In: S.N. Agathos and W. Reineke, Editors, Biotechnology for the Environment: Soil Remediation. Focus on Biotechnology Series, Volume 3b, pp. 1-2, Kluwer Academic Publishers, Dordrecht, The Netherlands, 148 pp. ISBN 1-4020-1051-6.
202. S. Goux, S.N. Agathos and L. Pussemier (2002). Towards a Better Understanding of Enhanced Pesticide Biodegradation. In: S.N. Agathos and W. Reineke, Editors, Biotechnology for the Environment: Stategy and Fundamentals. Focus on Biotechnology Series, Volume 3a, Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 141-156. ISBN 1-4020-0529-6.
203. S.N. Agathos and W. Reineke (2002). Preface. In: S.N. Agathos and W. Reineke, Editors, Biotechnology for the Environment: Strategy and Fundamentals. Focus on Biotechnology Series, Volume 3a, pp. v-vi, Kluwer Academic Publishers, Dordrecht, The Netherlands, 248 pp. ISBN 1-4020-0529-6.
204. G. Baré, H. Charlier, L. De Nijs, F. Verhoeye, Y.-J. Schneider, S. Agathos and P. Thonart (2001). Effects of Rice Protein Hydrolysates on Growth of CHO Cells and Production of Human Interferon-gama in Serum-Free Medium. In: E. Lindner-Olsson, N. Chatzissavidou and E. Lüllau, Editors, Animal Cell Technology: From Target to Market, pp. 217-219, Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-0264-5.
205. J. Mols, C. Burteau, F. Verhoeye, C. Peeters-Joris, G. Bastin, S.N. Agathos and Y.-J. Schneider (2001). Proteolytic Potential during Batch Cultivation in Serum-Free Media of an IFN-gamma Producing CHO Cell Line. In: E. Lindner-Olsson, N. Chatzissavidou and E. Lüllau, Editors, Animal Cell Technology: From Target to Market, pp. 227-229, Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-0264-5.
206. J.-C. Drugmand, L. Ikonomou, Y.-J. Schneider and S.N. Agathos (2001). Growth of High-Five Cells on Cultispher-S Microcarriers. In: E. Lindner-Olsson, N. Chatzissavidou and E. Lüllau, Editors, Animal Cell Technology: From Target to Market, pp. 332-334, Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-0264-5.
207. L. Ikonomou, J.-C. Drugmand, G. Bastin, Y.-J. Schneider and S.N. Agathos (2001). Physiology Effect of Insect Cells Cultured in a New Serum-Free Medium. In: E. Lindner-Olsson, N. Chatzissavidou and E. Lüllau, Editors, Animal Cell Technology: From Target to Market, pp. 338-340, Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-0264-5.
208. F. Verhoeye, C. Burteau, J. Mols, J.-S. Ballez, G. Baré, P. Thonart, G. Bastin, S.N. Agathos and Y.-J. Schneider (2001). Use of Plant Peptone-Containing Serum-Free Media for the Cultivation of CHO Cells in Suspension and on Microcarriers. In: E. Lindner-Olsson, N. Chatzissavidou and E. Lüllau, Editors, Animal Cell Technology: From Target to Market, pp. 362-364, Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-0264-5.
209. F. Verhoeye, C. Burteau, S. Chenu, J.-L. Goergen, A. Marc, G. Bastin, S.N. Agathos and Y.-J. Schneider (2001). Adaptation and Growth Kinetics of the Universal Host CHO Cell Lines in Serum-Free Medium. In: E. Lindner-Olsson, N. Chatzissavidou and E. Lüllau, Editors, Animal Cell Technology: From Target to Market, pp. 438-440, Kluwer Academic Publishers, Dordrecht. ISBN 1-4020-0264-5.
210. C.M. Peres, H. Naveau and S.N. Agathos (1999). Cross Induction of 4-Nitrobenzoate and 4-Aminobenzoate Degradation by Burkholderia cepacia strain PB4. In: R. Fass, Y. Flashner and S. Reuveny, Editors, Novel Approaches for Bioremediation of Organic Pollution, pp. 71-82, Plenum, New York. ISBN 0-306-46102-1.
211. L. Ikonomou, G. Bastin, Y.-J. Schneider and S.N. Agathos (1999). Growth on Microcarriers and Nutritional Needs of High Density Insect Cell Cultures. In: A. Bernard, B. Griffiths, W. Noé and F. Wurm, Editors, Animal Cell Technology: Products from Cells, Cells as Products, pp. 371-373, Kluwer Academic Publishers, Dordrecht. ISBN 0-7923-6075-3.
212. V. Achà, M. Meurens, H. Naveau and S.N. Agathos (1998). Continuous On-Line Monitoring of Organochlorine Compounds in a Fixed Bed Bioreactor by an Optical Infrared Sensor. In: Bioremediation and Phytoremediation -- Chlorinated and Recalcitrant Compounds (Wickramanayake, G.B. and Hinchee, R.E. Ed.), pp. 135-141, Battelle Press, Columbus, Ohio.
213. E. Hellin, H. Ali-Khodja, S. Deseveaux, F. Vandermesse, E.-J. Nyns, H. Naveau and S.N. Agathos (1997). Gas-phase methyl ethyl ketone biodegradation in a tubular biofilm reactor: microbiological and bioreactor aspects. In: D.L. Wise, Editor, Global Environmental Biotechnology, pp. 417-436, Kluwer Academic Publishers, Dordrecht / Springer-Science+Business Media, B.V. ISBN 978-90-481-4836-3; eBook: ISBN 978-94-017-1711-3; DOI 10.1007/978-94-017-1711-3.
214. S. El Fantroussi, J. Mahillon, H. Naveau and S.N. Agathos (1997). Introduction and PCR detection of Desulfomonile tiedjei in soil slurry microcosms.  In: D.L. Wise, Editor, Global Environmental Biotechnology, pp. 437-449., Kluwer Academic Publishers, Dordrecht / Springer-Science+Business Media, B.V. ISBN 978-90-481-4836-3; eBook: ISBN 978-94-017-1711-3; DOI 10.1007/978-94-017-1711-3.
215. S.N. Agathos (1997). Environmental Biotechnology in Research and Education. In: C. Ronneau and O. Bitchaeva, Editors, Biotechnology for Waste Management and Site Restoration, pp. 33-39, Kluwer Academic Publishers, Dordrecht. ISBN 0-7923-4769-2.
216. S.N. Agathos (1996). Insect Cell Bioreactors. In: J.M. Vlak, C.D. de Gooijer, J. Tramper & H.G. Miltenburger, Editors, Insect Cell Cultures: Fundamental and Applied Aspects, pp. 173-189, Kluwer Academic Publishers, Dordrecht. ISBN 0-7923-3403-5.
217. T.H. Lee, G.T. Chun, Y.K. Chang, J.D. Lee and S.N. Agathos (1996) Bioprocess Engineering Considerations in Cyclosporin A Fermentation by Immobilized Fungus Tolypocladium inflatum. In: R.H. Wijffels, R.M. Buitelaar, C. Bucke & J. Tramper, Editors, Immobilized Cells: Basics and Applications, pp. 402-409, Elsevier Science, Amsterdam. ISBN 0-444-81984-3. (Progess in Biotechnology, Volume 11).
218. S.N. Agathos (1994). Large Scale Insect Cell Production. In: K. Maramorosch and A.H. McIntosh, Editors, Insect Cell Biotechnology, pp. 89-103, CRC Press, Boca Raton, FL.
219. S.N. Agathos (1993). The Future of Insect Cell Culture Engineering. In: M.F.A. Goosen, A.J. Daugulis and P. Faulkner, Editors, Insect Cell Culture Engineering, pp. 218-237, Marcel Dekker, New York.
220. S.N. Agathos (1992). Insect Cell Culture. In: A.I. Laskin, Editor, Biotechnology International 1990/1991, Century Press, London.
221. S.N. Agathos (1991). Mass Production of Viral Insecticides. In: K. Maramorosch, Editor, Biotechnology for Biological Control of Pests and Vectors, pp. 217-235, CRC Press, Boca Raton, Florida.
222. S.N. Agathos and A.L. Demain (1988). The In Vivo Longevity of Antibiotic Synthetases. In: S. Aiba, Editor, Horizons of Biochemical Engineering, pp. 147-161, Oxford University Press, Oxford/New York.

D.        Actes (Proceedings) à comité de lecture

223. Matos, G.I., Junior, C.S., Oliva, T.C., Subtil, D.F., Matsushita, L.Y., Chaves, A.L., Lutterbach, M.T., Sérvulo, E.F., Agathos, S.N., and Stenuit, B. (2015). Bacterial community dynamics and ecotoxicological assessment during bioremediation of soils contaminated by biodiesel and diesel/biodiesel blends. Proceedings, 20^th National Symposium on Applied Biological Sciences, Louvain-la-Neuve, Belgium, 30 January 2015. Comm. Appl. Biol. Sci., 80/1: 157-161, ISSN 1379-1176.
224. B.S. Grama, A. Delhaye, S. Chader, D. Khelifi, S.N. Agathos and C. Jeffryes (2014). Canthaxanthin, astaxanthin and adonixanthin production from a Dactylococcus microalga in a new flat-plate airlift photobioreactor. Proceedings, 19th National Symposium on Applied Biological Sciences, Gembloux, Belgium, 7 February 2014. Comm. Appl. Biol. Sci. 79/1: 65-70.
225. S. Talvy, R. Nair, P. Demarche, S. Agathos and F. Debaste (2012). Modeling of bisphenol A degradation using immobilized/insolubilized laccase. Proceedings, 20th International Congress of Chemical and Process Engineering, CHISA 2012 and 15th Conference on Process Integration, Modelling and Optimisation for Energy Saving and Pollution Reduction, PRES 2012, Prague, Czech Republic, 25-29 August 2012, 8 pp.
226. S. Sart, A. Errachid, Y.-J. Schneider and S.N. Agathos (2011). Controlled expansion and differentiation of mesenchymal stem cells in a microcarrier based stirred bioreactor. Proceedings of the 22^nd Meeting of the European Society for Animal Cell Technology (ESACT), Vienna, Austria, May 15-18, 2011, BMC Proceedings 5 (Suppl. 8):P55. Published on line November 22, 2011. http://www.biomedcentral.com/1753-6561/5/S8/P55
227. J.-F. Michiels, J. Barbau, S. Sart, S.N. Agathos and Y.-J. Schneider (2009). Effects of soy peptone-supplemented medium on CHO-320 cells. Proceedings of the 21^st Meeting of the European Society for Animal Cell Technology (ESACT), Dublin, Ireland, June 7-10, 2009, ESACT Proceedings, Volume 5, Part 5, pp. 471-475. DOI 10.1007/978-94-007-0884-6_79.
228. S. Sart, Y.-J. Schneider and S.N. Agathos (2009). Impact of growth factors on the proliferation of ear mesenchymal stem cells on porous microcarriers. Proceedings of the 21^st Meeting of the European Society for Animal Cell Technology (ESACT), Dublin, Ireland, June 7-10, 2009, ESACT Proceedings, Volume 5, Part 2, pp. 161-176. DOI 10.1007/978-94-007-0884-6_27.
229. A. Provost, G. Bastin, S. Agathos and Y.-J. Schneider (2005). Metabolic design of macroscopic models: Application to CHO cells. Proceedings of the 44th IEE Conference on Decision and Control and the European Control Conference 2005 (ECC-CDC'05), Seville, Spain, December, 12-15, 2005, pp. 2982-2989.
230. D. Roosens, M. Degrez, E.M.B. Michel, S.N. Agathos, C. Dessaucy, A. Van Lierde (2004). Combined industrial wastewater treatment by association of electrochemical and biological techniques and membrane filtration (MF, UF, NF), Proceedings of the Second National Conference of The Chartered Institution of Water and Environmental Management (CIWEM 2004), Bretton Hall, Wakefield, England, 13-15 September 2004, Edited by N.J. Horan, volume 2, pp 253-260, Leeds, U.K., ISBN: 1-903958-09-01.
231. E.M.B. Michel, I. Sokolovska and S.N. Agathos (2004). Biodegradation of diesel fuel in soil at low temperature by Rhodococcus erythropolis. In: W. Verstraete, Editor, European Symposium on Environmental Biotechnology ESEB 2004, pp. 843-846, Taylor & Francis Group, London. ISBN 90-5809-653-X
232. L. Eyers, B. Stenuit, S. El Fantroussi and S.N. Agathos (2004). Microbial characterization of TNT contaminated soils and anaerobic TNT degradation: high and unusual denitration activity. In: W. Verstraete, Editor, European Symposium on Environmental Biotechnology ESEB 2004, pp. 51-54, Taylor & Francis Group, London. ISBN 90-5809-653-X
233. U. Nasution, F. Verhoeye, G. Bastin, S. Agathos and Y.-J. Schneider (2001). Quantitative modelling of growth and metabolism of CHO-K1 cell cultures in a serum-free medium. European Control Conference, ECC 2001, Porto, Portugal, September 4-7, 2001. Conference paper 7076307, Proceedings pp. 2522-2527. ISBN: 978-3-9524173-6-2
234. S. Goux, Y. Van Elsen, S.N. Agathos and L. Pussemier (1997). Biodegradation of Three s-Triazine Herbicides in Liquid Media under Different Media Conditions. 49th International Symposium on Crop Protection. Med. Fac. Landbouww. Univ. Gent 62/2a: 235-242.
235. O. Y. Bitchaeva, S.N. Agathos, C. Ronneau, G. Collard, J. Diaz, C.J. Duggleby, C. Sahut and J.H. Wissler (1997). Biotechnology for the Nuclear Industry. An International Experience. 3rd International Symposium on Environmental Biotechnology. Proc. ISEB (H. Verachtert and W. Verstraete, Eds.), Vol. I, pp. 295-301.
236. B. Van Aken, K. Skubisz, H. Naveau and S.N. Agathos (1997). The Biodegradation of Trinitrotoluene by the White-Rot Basidiomycete Phlebia radiata. 3rd International Symposium on Environmental Biotechnology. Proc. ISEB (H. Verachtert and W. Verstraete, Eds.), Vol. II, pp. 163-167.
237. E. Hellin, H. Ali-Khodja, S. Deseveaux, F. Vandermesse, S.N. Agathos and H. Naveau (1997). A Useful Tool to Study and Optimize the Treatment of VOC in Gaseous Phase: The Tubular Biofilm Reactor. 3rd International Symposium on Environmental Biotechnology. Proc. ISEB (H. Verachtert and W. Verstraete, Eds.), Vol. II, pp. 159-162.
238. C.M. Peres, H. Naveau and S.N. Agathos (1997). Bioremediation of Nitrobenzene by Simultaneous Reduction of Nitrobenzene into Aniline and Mineralization of the Aniline Formed. 3rd International Symposium on Environmental Biotechnology, Proc. ISEB (H. Verachtert and W. Verstraete, Eds.), Vol. I, pp. 169-172.
239. S. El Fantroussi, J. Mahillon, H. Naveau and S.N. Agathos (1996). Introduction and PCR Detection of Anaerobic Dechlorinating Bacteria in Soil Slurry Microcosms. Med. Fac. Landbouww. Univ. Gent 61/4b: 1935-1938.
240. B. Volesky and S. Agathos (1974). Oil removal from refinery wastes by air flotation. Water Pollution Research in Canada 9: 328-339.

E.              Divulgations de brevets

241. Jian Li, Suxia Guo, Ruiming Han, Zhaolei Zhang and Spiros N. Agathos (2014). A Method for Large Scale Cultivation of Microalgae. China Patent Application 201410468458.X.
242. Jian Li, Zhaolei Zhang, Suxia Guo, Ruiming Han and Spiros N. Agathos (2014). A Method to Produce EPA from Marine Microalgae. China Patent Application 201410448353.8.
243. M. Lucas, F. Buchon, B. Gobeau, V. Mertens, S. Vanhulle, S.N. Agathos, C.-M. Bols, A.-M. Corbisier and D. Wesenberg (2003). Sustainable Process for the Treatment and Detoxification of Liquid Waste. World Patent WO03/035581, May 1, 2003.
244. F. Verhoeye, Y.-J. Schneider, P. Thonart, G. Baré and S. Agathos (2002). Cryoprotective Solutions. European Patent EP 1 181 865, February 27, 2002.
245. P. Ledent, H. Michels, S. Agathos, P. Demyttenaere and G. Blackman (1999). Method for Reducing the Effect of Detergents upon Germination and/or Growth of Microorganisms. European Patent EP 915 061, May 12, 1999. World Patent WO99/20571, April 29, 1999.
246. G.D. Case, M.M. Howton, D.S. Beattie, J.F. Worley III and S.N. Agathos (1989). Method of Detecting Cholinesterase Inhibiting Chemical Agents with Biochemical Amplifying Component in Film Form with a Self-Contained Electronic Membrane Sensor. U.S. Patent and Trademark Office Application, November 14, 1989, Serial No. 07/435,765.

F.       Éditoriaux

247. G. Salum, S.A. Dahoumane and S.N. Agathos (2016). Letter to the Editor: Life Sciences at Yachay Tech University in Ecuador. Biotechnology. Bionatura 1(3): 106. http://dx.doi.org/10.21931/RB/2016.01.03.2
248. S.N. Agathos and N. Boon (2015). Editorial Overview: Environmental Biotechnology. Current Opinion in Biotechnology 33: 1-3.
249. S.N. Agathos, F. Fava and A. Scoma (2013). Biotechnology for the bio- and green economy. New Biotechnology 30: 581-584.
250. J.M. Park, S.N. Agathos and C.-O. Jeon (2013). Special issue on International Biotechnology Symposium, IBS-2012: September 16-21, Daegu, Korea. Bioresource Technology 145: 1.
251. Y. Li, S. Sart and S.N. Agathos (2013). Mass production of stem cell-derived progeny in bioreactors. International Journal of Stem Cell Research and Transplantation 1(2):1-3.
252. S. Riva, P. Morandini, G. Sannia and S.N. Agathos (2011). Editorial – Special issue on International Biotechnology Symposium, IBS-2010: September 14-18, Rimini, Italy. Enzyme and Microbial Technology 49(6-7): pp. iv.